View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_high_13 (Length: 313)
Name: NF2306_high_13
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 5705232 - 5704942
Alignment:
| Q |
1 |
gtcgacaatataaaggattttaaggtatctgcaacgacatttcggaaccacgatatataggttgagttgaatattatttgaatacgaacatacccttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5705232 |
gtcgacaatataaaggattttaaggtatctgcaacgacatttcgaaaccacgatatataggttgagttgaatattatttgaatacgaacatacccttttt |
5705133 |
T |
|
| Q |
101 |
ggggtgtccaaagttgtaatagtactaaaggtgggggacatagacacaagtgtggtggtgggagttcgaggactatgaggaaggccaagactgttacgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5705132 |
ggggtgtccaaagttgtaatagtactaaaggtgggggacatagacacaagtgtggtggtgggagttcgaggactatgaggaaggccaagactgttacgtt |
5705033 |
T |
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| Q |
201 |
tctgcttttgtctctcgcgtgctttgtggttttggaaccaatagaacacatttttcccttcaattttaccgtacttgctaagttgaactgt |
291 |
Q |
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| T |
5705032 |
tctgcttttgtctctcgcgtgctttgtggttttggaaccaatagaacacatttttcccttcaattttaccgtacttgctaagttgaactgt |
5704942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 32906809 - 32906769
Alignment:
| Q |
224 |
ttgtggttttggaaccaatagaacacatttttcccttcaat |
264 |
Q |
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||||| || ||||||||||||||||||||||| |||||||| |
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| T |
32906809 |
ttgtgattctggaaccaatagaacacattttttccttcaat |
32906769 |
T |
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