View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_high_14 (Length: 294)
Name: NF2306_high_14
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 43614698 - 43614430
Alignment:
| Q |
19 |
aaatgaaattgactttgaaaactaataataataaattaataatttttcagtggcgacccaacaatgtacgaacgttattggcgacaaatgggagacaaga |
118 |
Q |
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| T |
43614698 |
aaatgaaattgactttgaaaactaataataataaattaataacttttcagtggcgacccaacaatgtacgaacgttattggcgacaaatgggagacaaga |
43614599 |
T |
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| Q |
119 |
ccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaactttcaaaggaagtagtgag |
218 |
Q |
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| T |
43614598 |
ccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaattttcaaaggaagtagtgag |
43614499 |
T |
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| Q |
219 |
gttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctca |
287 |
Q |
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| T |
43614498 |
gttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctca |
43614430 |
T |
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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 287
Target Start/End: Complemental strand, 34688427 - 34688252
Alignment:
| Q |
112 |
gacaagaccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaactttcaaaggaag |
211 |
Q |
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| T |
34688427 |
gacaagagcacgatcataataccaggatggcaatccatgagctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggagg |
34688328 |
T |
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| Q |
212 |
tagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctca |
287 |
Q |
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| T |
34688327 |
tagtgaggttgcacagagtggtcgggaatgcagtcacagaaggacgtcacattgttgtagggacaggttcctctca |
34688252 |
T |
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