View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_high_2 (Length: 752)
Name: NF2306_high_2
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 266 - 734
Target Start/End: Original strand, 32684175 - 32684649
Alignment:
| Q |
266 |
tatagatccaaaatatgacaaaatttgcagaagttgatggatacgaagtttgggtgtccatcaagtgcataataaaaatacaacaacaatatatgaatta |
365 |
Q |
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| T |
32684175 |
tatagatccaaaatatgacaaagtttgcacaagttgatggatacgaagtttgggtgtccatcaagtgcataataaaaatacaacaacaatatatgaatta |
32684274 |
T |
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| Q |
366 |
tgtccaaaataaaattattcaggaaggaaacaggcacgaataaaatgatatgcatgcatgaagaaatcatagattccaagggatttattcttctctccat |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32684275 |
tgtccaaaataaaattattcaggaaggaaacaggcacgaataaaatgatatgcatgcatgaagaaatcatagattccatgggatttattcttctctccat |
32684374 |
T |
|
| Q |
466 |
ccgttaaagcttctactttgcaaatagggcaaatattttttatcatcagccattttattatgcagtcaacgtgatatccatgcttgcatcgaagaattcc |
565 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32684375 |
ccgttaaagcttctaatttgcaaatagggcaaatattttttatcatcagccattttattatgcagtcaacgtgatatccatgcttgcattgaagaattcc |
32684474 |
T |
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| Q |
566 |
aatcttctcttgaatcttaaattcttcctattcaagcaacaaggaataattgattagtaaatcaaataaagaagtgccctaaaaaatttatatctaaaat |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || | |||| |
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| T |
32684475 |
aatcttctcttgaatcttaaattcttcctattcaagcaacaaggaataattgattagtaaattaaataaagaaatgccctaaaaaatttaaatttgaaat |
32684574 |
T |
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| Q |
666 |
atcaagtacaaaattattgaaaatattgaatc------aagttgttgctgaaagatcatacctggcatatcatgc |
734 |
Q |
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| T |
32684575 |
attaagtacaaaattattgaaaagattgaatcaaatggaacttgttgctaaacgatcatacctggcatatcatgc |
32684649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 13243885 - 13244037
Alignment:
| Q |
25 |
cattgtgtgtattctaacgtctaaaggataagcatatgagagatacaattcgcatgatctgttccatgttgcatatggttgcagtacgtcacgatctatt |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13243885 |
cattgtgtgtattctaacgtctaaaggataagcatatgagagatacaattcgcatgatctgttccatgttgcatatggttgcagtccgtcacgatctatt |
13243984 |
T |
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| Q |
125 |
gaagttgatatgtttcaccatgaaaatattgtttcttaaatttcaacaaggcc |
177 |
Q |
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| T |
13243985 |
gaaattgatatgtttcaccatgaaaatattgtttcttgaatttcaacaaggcc |
13244037 |
T |
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