View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_high_3 (Length: 534)
Name: NF2306_high_3
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Original strand, 28598449 - 28598956
Alignment:
| Q |
16 |
catactactaatattaatgttcaagcatgtgaaggaaactttgctaatgatgtataatacaaattagaaaaccnnnnnnnnaccttagcttggaaatcat |
115 |
Q |
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| T |
28598449 |
catactactaatattaatgttcaagcatgtgaaggaaacttttctaatgatgtataatacaaattagaaaaccttttttttaccttagcttggaaatcat |
28598548 |
T |
|
| Q |
116 |
gttgggacaaggcaagattagaatgaagcatcttgattgcaacattggaataatgatcaatgtgtcctttataaacattactccaatgatcaccaccaca |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28598549 |
gttgggacaaggcaagattagaatgaagcatcttgattgcaacattggaataatgatcaatgtgtcctttataaacattactccaat---caccaccaca |
28598645 |
T |
|
| Q |
216 |
tttcaacctaaagtgttctgaaaaattgtgacttgccattatgatctcttcctttgtgtactctcttaaactacaaccattatctattatcttattacac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28598646 |
tttcaacctaaagtgttctgaaaaattgtgacttgccattatgatctcttcctttgtgtactctcttaaactacaaccattatctattatcttattacac |
28598745 |
T |
|
| Q |
316 |
atttctgtggcatcttttcctttgaaaaatttaatccttttgttaaacacatctctttgtctacttaactcctctatctccattaacatatttgtccttt |
415 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28598746 |
atttttgtggcatcttttcctttgaaaaatttaatccttttgttaaacacatctctttgtctacttaactcctctatctccattaacatatttgtccttt |
28598845 |
T |
|
| Q |
416 |
cattcattactttctctaatttggtttcatattctgaaacttccaatgtggaaacattaagtttattttttaggtctagttgtagatcttgcagtgagct |
515 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28598846 |
cattcattactttctctaatttggtttcacattctgaaacttccaatgtggaaacattaagtttattttttaggtctagttgtagatcttgcagtgagct |
28598945 |
T |
|
| Q |
516 |
aagcctttgtt |
526 |
Q |
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||||||||||| |
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| T |
28598946 |
aagcctttgtt |
28598956 |
T |
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