View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_high_4 (Length: 518)
Name: NF2306_high_4
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 71 - 498
Target Start/End: Complemental strand, 55123925 - 55123500
Alignment:
| Q |
71 |
aaatattcttagttgcagcagtaactccctctacatataacctatgaaaggagttaaatcgattatggttagattttaccatgcaatgtgcagagagatg |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55123925 |
aaatattcttagttgcagcagtaactccctctacatataacctatgaaaggagttaaatcgattatggttagatttcgccatgcaatgtgcagagagatg |
55123826 |
T |
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| Q |
171 |
tatatgctaagcctaatatgctgaataatatagtgtttatcctactaatattgaagagaaaactcctttaattcaataactcaaacgacaaaatgtagat |
270 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55123825 |
tatatgctaagcataatatgctgaataata--gtgtttatcctactaatattgaagagaaaactcctttaattcaataactcaaacgacaaaatgtagag |
55123728 |
T |
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| Q |
271 |
caaactacaatgttattaaaagagaaaatttagaaaaccggaaactataactactaatgtcaactcaattctaataaccattccaaaaagaacaatactc |
370 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55123727 |
caaactaccatgttattaaaagagaaaatttagaaaaccggaaactataactactaatgtcaactcaattctaataaccattccaaaaagaaaaatactc |
55123628 |
T |
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| Q |
371 |
aattccaataacatgtcaagtctaacgactactagactaccaacattaaattcgttttggtggaactggactcggatcctttaagcaaaatctcattttc |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55123627 |
aattccaataacatgtcaagtctaacgactactagactaccaacattaaattcgttttggtggaactggactcggatcctttaagcaaaatctcattttc |
55123528 |
T |
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| Q |
471 |
gagacgtggtggttggaaggggagacct |
498 |
Q |
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| T |
55123527 |
gagacgtggtggttggaaggggagacct |
55123500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 55124020 - 55123950
Alignment:
| Q |
1 |
acaatcaggtaacatcaacaatatcgaataatgacaataatgttgcttagtgccaataataattcaaaata |
71 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55124020 |
acaatcaggtaacatcaacaatatcgaataatgacaataatgttgcttagtgccaataataattcaaaata |
55123950 |
T |
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