View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2306_high_5 (Length: 468)

Name: NF2306_high_5
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2306_high_5
NF2306_high_5
[»] chr2 (1 HSPs)
chr2 (18-312)||(40416484-40416778)
[»] chr1 (1 HSPs)
chr1 (312-362)||(10854006-10854055)
[»] chr7 (2 HSPs)
chr7 (313-362)||(41115326-41115374)
chr7 (309-364)||(46269718-46269772)
[»] chr8 (1 HSPs)
chr8 (314-364)||(33985864-33985913)
[»] chr4 (1 HSPs)
chr4 (342-376)||(41764182-41764216)
[»] chr5 (1 HSPs)
chr5 (319-360)||(25878346-25878387)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 40416484 - 40416778
Alignment:
Q  18 gacactgatagctagcaaaaatgtgcactaagcaattaaaattcttgcctgtttaacacttcttttgagcagagacacgcaagtatcatcgtgaatataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  40416484 gacactgatagctagcaaaaatgtgcactaagcaattaaaattcttgcctgtttaacacttcttttgaacagagacccgcaaatatcatcgtgaatataa 40416583  T
Q  118 cgtgttgtgtatgaagagagatttttctctattggttttgtttagccttgcgtgtgttaggctagtttgtacgctatgtcctaactaaacaaatataaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40416584 cgtgttgtgtatgaagagagatttttctctattggttttgtttagccttgcgtgtgttaggctagtttgtacgctatgtcctaactaaacatatataaag 40416683  T
Q  218 aacacttgaatggtccccacatgccacatcatttgtcatgaacataagttgattttactccaattcccagttccatacaatgagtctctaaaata 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40416684 aacacttgaatggtccccacatgccacatcatttgtcatgaacataagttgattttactccaattcccagttccttacaatgagtctctaaaata 40416778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 10854055 - 10854006
Alignment:
Q  312 acagttttgataattggacacaaaaaatttaaacacaatacagacaccata 362  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  10854055 acagttatgataattgaacacaaaaaatt-aaacacaatacagacaccata 10854006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 41115374 - 41115326
Alignment:
Q  313 cagttttgataattggacacaaaaaatttaaacacaatacagacaccata 362  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  41115374 cagttatgataattgaacacaaaaaatt-aaacacaatacagacaccata 41115326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Complemental strand, 46269772 - 46269718
Alignment:
Q  309 aatacagttttgataattggacacaaaaaatttaaacacaatacagacaccatatt 364  Q
    |||||| || ||||||||||||||||||  || |||||||||||||||||||||||    
T  46269772 aatacaattatgataattggacacaaaag-ttgaaacacaatacagacaccatatt 46269718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Complemental strand, 33985913 - 33985864
Alignment:
Q  314 agttttgataattggacacaaaaaatttaaacacaatacagacaccatatt 364  Q
    |||| ||||||||||||||||||  || |||||||||||||||||||||||    
T  33985913 agttatgataattggacacaaaag-ttgaaacacaatacagacaccatatt 33985864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 41764216 - 41764182
Alignment:
Q  342 aaacacaatacagacaccatattaaaatacggtat 376  Q
    |||||||||||||||||||||||| ||||||||||    
T  41764216 aaacacaatacagacaccatattagaatacggtat 41764182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 25878387 - 25878346
Alignment:
Q  319 tgataattggacacaaaaaatttaaacacaatacagacacca 360  Q
    ||||||||| ||||||||||  ||||||||||||||||||||    
T  25878387 tgataattgaacacaaaaaaaataaacacaatacagacacca 25878346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University