View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2306_high_6 (Length: 452)

Name: NF2306_high_6
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2306_high_6
NF2306_high_6
[»] chr1 (6 HSPs)
chr1 (1-443)||(2416717-2417160)
chr1 (195-366)||(2789613-2789784)
chr1 (7-188)||(2789324-2789517)
chr1 (370-443)||(2404146-2404219)
chr1 (370-443)||(29833394-29833467)
chr1 (370-443)||(734897-734970)
[»] chr5 (5 HSPs)
chr5 (370-443)||(37207664-37207737)
chr5 (373-443)||(23164559-23164629)
chr5 (370-443)||(22600704-22600777)
chr5 (373-443)||(11850226-11850296)
chr5 (373-443)||(11852484-11852554)
[»] chr8 (3 HSPs)
chr8 (373-443)||(21268448-21268518)
chr8 (373-443)||(36379786-36379856)
chr8 (373-443)||(36377501-36377571)
[»] chr7 (3 HSPs)
chr7 (370-443)||(8414809-8414882)
chr7 (370-443)||(36464542-36464615)
chr7 (371-443)||(3051993-3052065)
[»] chr2 (2 HSPs)
chr2 (373-443)||(31486678-31486748)
chr2 (373-443)||(31488962-31489032)
[»] chr4 (2 HSPs)
chr4 (311-366)||(4244630-4244685)
chr4 (7-104)||(4243915-4244015)


Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 2417160 - 2416717
Alignment:
Q  1 atcggttgctgctctctctgatccatacaatgaacataaagaagtcagtgcagttgaagctctgtctgagattcaccgatatatttctccgtctcttgac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2417160 atcggttgctgctctctctgatccatacaatgaacataaagaagtcagtgcagttgaagctctgtctgagattcaccgatatatttctccgtctcttgac 2417061  T
Q  101 caggcaagtttaccgtttcagtcatgtttcatagggtatttggacactttttcgtaagtgtttatcatataagagcttatgtatacgtactttctgtcgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2417060 caggcaagtttaccgtttcagtcatgtttcatagggtatttggacactttttcgtaagtgtttatcatataagagcttatgtatacgtactttctgtcgt 2416961  T
Q  201 aagccctcaaataaagtatttcaaaccctcctattaacttgcaagctacaatatcatttaagttctattgaagagagtgagcaactaagagtgccttatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416960 aagccctcaaataaagtatttcaaaccctcctattaacttgcaagctacaatatcatttaagttctattgaagagagtgagcaactaagagtgccttatt 2416861  T
Q  301 gattgtttgttgatttgacaggaagttgttgacaatctttccattgaactgccaaaggctgtttcagagtgatgaagaataaaatagaagactctaggat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416860 gattgtttgttgatttgacaggaagttgttgacaatctttccattgaactgccaaaggctgtttcagagtgatgaagaataaaatagaagactctaggat 2416761  T
Q  401 accagagaataatgtggaagtctctc-gaagactacagaataat 443  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  2416760 accagagaataatgtggaagtctctcagaagactacagaataat 2416717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 195 - 366
Target Start/End: Original strand, 2789613 - 2789784
Alignment:
Q  195 tgtcgtaagccctcaaataaagtatttcaaaccctcctattaacttgcaagctacaatatcatttaagttctattgaagagagtgagcaactaagagtgc 294  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  2789613 tgtcataagccctcaaataaagtatttcaaaccctcctattaacttccaagctacaatatcatgtaagttctattgaagagagtgagcgaccaagagtgc 2789712  T
Q  295 cttattgattgtttgttgatttgacaggaagttgttgacaatctttccattgaactgccaaaggctgtttca 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2789713 cttattgattgtttgttgatttgacaggaagttgttgacaatctttccatggaactgccaaaggctgtttca 2789784  T

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Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 2789324 - 2789517
Alignment:
Q  7 tgctgctctctctgatccatacaatgaacataaagaagtcagtgcagttgaagctctgtctgagattcaccgatatattt---ctccgtctcttgaccag 103  Q
    |||||| |||||||||||| ||| || |||||||||| ||| |||| |||||||||||||||| ||||| ||||| ||||   || ||||||||||||||    
T  2789324 tgctgcactctctgatccagacagtggacataaagaaatcaatgcatttgaagctctgtctgaaattcatcgatacatttgttcttcgtctcttgaccag 2789423  T
Q  104 gcaagtttaccgtttcag--------tcatgtttcatagggtatttggacactttttc-gtaagtgtttatcatataagagcttatgtatacgt 188  Q
    ||||| |||| |||||||        |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  2789424 gcaagcttactgtttcagactttcagtcatgtttcatagggtatttggacacttattcagtaagtgtttatcatataagagcttatgtatacgt 2789517  T

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Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 2404219 - 2404146
Alignment:
Q  370 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||    
T  2404219 tgatgaagaataaaatagaagactctaggatactagagaataatgtggaaatctctagaagactaaagaataat 2404146  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 29833467 - 29833394
Alignment:
Q  370 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    ||||||||||||| || ||||||||||| |||| |||||||||||||||||||||| ||| |||| ||||||||    
T  29833467 tgatgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataat 29833394  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 734970 - 734897
Alignment:
Q  370 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    ||||||||||||| || ||||||||||| |||| || ||||||||||||||||| | |||||||| ||||||||    
T  734970 tgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctttagaagactaaagaataat 734897  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 37207664 - 37207737
Alignment:
Q  370 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    ||||||||||||| || ||||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||    
T  37207664 tgatgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataat 37207737  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 23164629 - 23164559
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||    
T  23164629 tgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataat 23164559  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 22600704 - 22600777
Alignment:
Q  370 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    ||||||||||||| || ||||||||||| |||  || ||||||||||||||||||| |||||||| | ||||||    
T  22600704 tgatgaagaataatatggaagactctagaatattagggaataatgtggaagtctctagaagactaaataataat 22600777  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 11850296 - 11850226
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||| | |||| |  ||||||||||||||||||| |||||||| ||||||||    
T  11850296 tgaagaataatatggaagactcttgaatactatggaataatgtggaagtctctagaagactaaagaataat 11850226  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 11852554 - 11852484
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||||| |||| |   ||||||| |||||||||| |||||||| ||||||||    
T  11852554 tgaagaataatatggaagactctagaatactatgaaataatgaggaagtctctagaagactaaagaataat 11852484  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 21268518 - 21268448
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||||| |||| |||||||||||||||||||||| ||| |||| ||||||||    
T  21268518 tgaagaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaagaataat 21268448  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 36379856 - 36379786
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||||| |||| || ||||||||||||||||||| |||||||| ||||||||    
T  36379856 tgaagaataatatggaagactctagaatactagggaataatgtggaagtctctagaagactaaagaataat 36379786  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 443
Target Start/End: Complemental strand, 36377571 - 36377501
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||||| |||| |  ||||||||||||||||||| |||||||| ||||||||    
T  36377571 tgaagaataatatggaagactctagaatactaaggaataatgtggaagtctctagaagactaaagaataat 36377501  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 8414882 - 8414809
Alignment:
Q  370 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    ||||||||||||| || ||||||||||| |||| |||||||||||||||||| ||| ||| |||| ||||||||    
T  8414882 tgatgaagaataatatggaagactctagaatactagagaataatgtggaagtatctagaacactaaagaataat 8414809  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 36464615 - 36464542
Alignment:
Q  370 tgatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    ||||||| ||||| || ||||||||||| |||| |||||||||||||||||||||| ||| |||| | ||||||    
T  36464615 tgatgaaaaataatatggaagactctagaatactagagaataatgtggaagtctctagaacactaaataataat 36464542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 443
Target Start/End: Original strand, 3051993 - 3052065
Alignment:
Q  371 gatgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||||| || ||||||||||| |||| |||||||||||| |||||||||  || |||| ||||||||    
T  3051993 gatgaagaataatatggaagactctagaatactagagaataatgtcgaagtctctataacactaaagaataat 3052065  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 31486678 - 31486748
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||||| |||| || |||||||||||||| |||| |||||||| ||||||||    
T  31486678 tgaagaataatatggaagactctagaatactagggaataatgtggaagcctctagaagactagagaataat 31486748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 373 - 443
Target Start/End: Original strand, 31488962 - 31489032
Alignment:
Q  373 tgaagaataaaatagaagactctaggataccagagaataatgtggaagtctctcgaagactacagaataat 443  Q
    |||||||||| || ||||||||||| |||| || |||||||||||||||||||  ||||||| ||||||||    
T  31488962 tgaagaataatatggaagactctagaatactagggaataatgtggaagtctctaaaagactaaagaataat 31489032  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 4244630 - 4244685
Alignment:
Q  311 tgatttgacaggaagttgttgacaatctttccattgaactgccaaaggctgtttca 366  Q
    ||||||||||||||||||||||   ||||||| ||||| |||||||||||||||||    
T  4244630 tgatttgacaggaagttgttgatgctctttcctttgaagtgccaaaggctgtttca 4244685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 4243915 - 4244015
Alignment:
Q  7 tgctgctctctctgatccatacaatgaacataaagaagtcagtgcagttgaagctctgtctgagattcaccgatatat---ttctccgtctcttgaccag 103  Q
    ||||||| | |||||||| |||||||||||||| ||   |  |||| ||||||||||||| |||||||| ||||| ||   ||| |||||||||||||||    
T  4243915 tgctgctttttctgatccgtacaatgaacataaggagaacgatgcatttgaagctctgtcagagattcatcgatacatttgttccccgtctcttgaccag 4244014  T
Q  104 g 104  Q
    |    
T  4244015 g 4244015  T

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