View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2306_low_1 (Length: 954)
Name: NF2306_low_1
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 631; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 711
Target Start/End: Original strand, 55269693 - 55270403
Alignment:
| Q |
1 |
gaacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgagtgatcttccctccaagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55269693 |
gaacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgagtgatcttccctccaagct |
55269792 |
T |
|
| Q |
101 |
cttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacacatgaaacatattttaccattaacagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55269793 |
cttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacacatgaaacatattttaccattaacagg |
55269892 |
T |
|
| Q |
201 |
acagagctgcgcagaaagctagtttaagcttcaaggtcaaataatttaacttatgaactaacctgtgcataagcagttcccttagagtattcggtgacac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55269893 |
acagagctgcgcagaaagctagtttaagcttcaaggtcatataatttaacttatgaactaacctgtgcataagcagttcccttagagtattcggtgacac |
55269992 |
T |
|
| Q |
301 |
cataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgtactgtaggacatgcaaca----aaaacatgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
55269993 |
cataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgtactgtaggacatgcaacaaattaaaacatgt |
55270092 |
T |
|
| Q |
397 |
gtttctattaattgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcagga |
496 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55270093 |
gtttct----attgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcagga |
55270188 |
T |
|
| Q |
497 |
ttatcaaccttcctcactaccttcaagcccaaagcctatgtaaatatgatccataagaac----atagcatcggttaataaaccacatttggtttaaata |
592 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55270189 |
ttatcaaccttcctcaccaccttcaagcccaaagcctatgtaaatatgatccataagaacatatatagcatcggttaataaaccacatttggtttaaata |
55270288 |
T |
|
| Q |
593 |
atgcataattaaatcatacataactcatcaaatacaattctctgattctattttgtacatacaagcaaaagctatcaaatagtacaagtactaatcttga |
692 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
55270289 |
atgcataattaaat----cataactcatcaaatacaattctctgattctattttgtacatacaaccaaaagctatcaaatagtacaagtactaatcttga |
55270384 |
T |
|
| Q |
693 |
ctcttcgcagacaggaaat |
711 |
Q |
| |
|
|||||| || ||||||||| |
|
|
| T |
55270385 |
ctcttcacacacaggaaat |
55270403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 2 - 711
Target Start/End: Original strand, 55262830 - 55263539
Alignment:
| Q |
2 |
aacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgagtgatcttccctccaagctc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
55262830 |
aacttacagttttccatccatctggatctaaaaaggaagtgacctttgtgttaaggccaggaattggccctggttgcagagtgatctcccctccaagctc |
55262929 |
T |
|
| Q |
102 |
ttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacacatgaaacatattttaccattaacagga |
201 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || | | |
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|
| T |
55262930 |
ttgtgtgactaggttgactacatcagcactcttgtagacatcatcagtaccaatggcaatctgttatagacacatgaaacatattttaccatcaatggta |
55263029 |
T |
|
| Q |
202 |
cagagctgcgcagaaagctagtttaagcttcaaggtcaaataatttaacttatgaactaacctgtgcataagcagttcccttagagtattcggtgacacc |
301 |
Q |
| |
|
|| | || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55263030 |
cataaacacgaagaaagctagtttaagcttcaaggtcatataatttaacttatgaactaacctgtgcataagcagttcccttagagtattcggtgacacc |
55263129 |
T |
|
| Q |
302 |
ataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgtactgtaggacatgcaaca----aaaacatgtg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
55263130 |
ataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaagtatagcaatagtgtactgtaggacatgcaacaaattaaaacatgtg |
55263229 |
T |
|
| Q |
398 |
tttctattaattgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcaggat |
497 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55263230 |
tttct----attgtagttgtataatctatgctttctgattagaatgtcagtcacattgcaaagaaaaaggcatgaggaaacatcaccttgttctcaggat |
55263325 |
T |
|
| Q |
498 |
tatcaaccttcctcactaccttcaagcccaaagcctatgtaaatatgatccataagaac----atagcatcggttaataaaccacatttggtttaaataa |
593 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55263326 |
tatcaaccttcctcaccaccttcaagcccaaagcctatgtaaatatgatccataagaacatatatagcatcggttaataaaccacatttggtttaaataa |
55263425 |
T |
|
| Q |
594 |
tgcataattaaatcatacataactcatcaaatacaattctctgattctattttgtacatacaagcaaaagctatcaaatagtacaagtactaatcttgac |
693 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55263426 |
tgcataattaaat----cataactcatcaaatacaattctctgattctattttgtacatacaaccaaaagctatcaaatagtacaagtactaatcttgac |
55263521 |
T |
|
| Q |
694 |
tcttcgcagacaggaaat |
711 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
55263522 |
tcttcgcacacaggaaat |
55263539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 751 - 938
Target Start/End: Original strand, 55263569 - 55263756
Alignment:
| Q |
751 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
850 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55263569 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
55263668 |
T |
|
| Q |
851 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccctgaactggaccagcctcccttgtgatatttc |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55263669 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccttgaactggaccagcctcccttgtgatatttc |
55263756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 751 - 938
Target Start/End: Original strand, 55270433 - 55270620
Alignment:
| Q |
751 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcgaagacttatttgacagaatgggtcgtgaactataggtctttggaca |
850 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55270433 |
ttcgattgttaccttttcataaaactttatggcacgttctaaatcaccaacgcggagacttatttgacagaatgggtcgtgaactataggtctttgaaca |
55270532 |
T |
|
| Q |
851 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccctgaactggaccagcctcccttgtgatatttc |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
55270533 |
agtgcaaaagtgtagccatcaggatccttcacaaaggcaataacagttgtcccaccttgaactggaccagcctcccttgtgatgtttc |
55270620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 8300857 - 8301029
Alignment:
| Q |
2 |
aacttacagttttccatccatctggatctaaaaaagaaacgacttttgtgttaaggccgggaattggccctggttgccgagtgatcttccctccaagctc |
101 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||| || |||||||| ||||| || |||||||||||||||| || ||||||||||||| || |
|
|
| T |
8300857 |
aactcacagttttccatccatctggatctaagaaagaagtgatctttgtgttgaggccagggattggccctggttgcctggtaatcttccctccaaattc |
8300956 |
T |
|
| Q |
102 |
ttgcgttactaggttgactacatcagcactcttgtagacatcatcagtaccaacagcaatctgtcatagacac |
174 |
Q |
| |
|
||| || |||||||||||| || ||||||||||| |||||||| || |||||||||| |||| ||| |||| |
|
|
| T |
8300957 |
ttgagtggctaggttgactaactcggcactcttgtatacatcatcggtgccaacagcaacctgttatatacac |
8301029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 256 - 375
Target Start/End: Original strand, 8301107 - 8301226
Alignment:
| Q |
256 |
aactaacctgtgcataagcagttcccttagagtattcggtgacaccataattatatgtcaactccaacacagttgcgtcgtcctcctctttatacccaag |
355 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||| |||||||||| | | |||| ||||||| |||||||| |
|
|
| T |
8301107 |
aactaacctgtgcataagcatttcccttggtgtattcagtgacaccatagttatatgtcagctccaacacaatggtctcgtgctcctctgcgtacccaag |
8301206 |
T |
|
| Q |
356 |
tatagcaatagtgtactgta |
375 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
8301207 |
catagctaaagtgtactgta |
8301226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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