View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2306_low_12 (Length: 361)

Name: NF2306_low_12

Description: NF2306

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2306_low_12

[»] chr7 (3 HSPs)

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 3)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 91; E-Value: 5e-44

Query Start/End: Original strand, 241 - 335

Target Start/End: Original strand, 32866765 - 32866859

Alignment:

Q	241	ttagaatatgctagttttaaaaataaataattgatatataattttatacgtgtatgctcaaattattttattttgttatgtaatctatcaaatgc	335	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32866765	ttagaatctgctagttttaaaaataaataattgatatataattttatacgtgtatgctcaaattattttattttgttatgtaatctatcaaatgc	32866859	T

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Target: chr7; HSP #2

Raw Score: 81; E-Value: 5e-38

Query Start/End: Original strand, 14 - 94

Target Start/End: Original strand, 32866538 - 32866618

Alignment:

Q	14	aaaaacaatcatctttttcataaaaatctctcatctaacccggtgagtgctaattgccaacttatttttctgtttaccgtg	94	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32866538	aaaaacaatcatctttttcataaaaatctctcatctaacccggtgagtgctaattgccaacttatttttctgtttaccgtg	32866618	T

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Target: chr7; HSP #3

Raw Score: 42; E-Value: 0.000000000000009

Query Start/End: Original strand, 160 - 217

Target Start/End: Original strand, 32866684 - 32866741

Alignment:

Q	160	ataaaacacgatttggtcgcaataaagttttggatggtcacgatttagacaaacaatc	217	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32866684	ataaaacataatttggtcacaataaagttttgaatggtcacgatttagacaaacaatc	32866741	T

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