View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2306_low_16 (Length: 277)

Name: NF2306_low_16
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2306_low_16
NF2306_low_16
[»] chr1 (3 HSPs)
chr1 (19-265)||(40795658-40795904)
chr1 (19-264)||(41670290-41670535)
chr1 (28-165)||(29391455-29391592)
[»] chr4 (11 HSPs)
chr4 (19-183)||(34662184-34662348)
chr4 (19-183)||(26433995-26434159)
chr4 (19-186)||(23402042-23402209)
chr4 (19-183)||(23885798-23885962)
chr4 (19-183)||(26832706-26832870)
chr4 (19-180)||(23415852-23416013)
chr4 (19-183)||(23453515-23453679)
chr4 (19-186)||(23868700-23868867)
chr4 (19-183)||(26435775-26435939)
chr4 (19-186)||(23408683-23408850)
chr4 (19-183)||(24307194-24307358)
[»] chr7 (1 HSPs)
chr7 (26-187)||(40180420-40180581)
[»] chr8 (1 HSPs)
chr8 (32-178)||(29684676-29684822)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 40795904 - 40795658
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||    
T  40795904 tctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgc 40795805  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40795804 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttct 40795705  T
Q  219 ccgctttggttttctctgcgggagctttttctgctggcttcatctca 265  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  40795704 ccgctttggttttctctgcgggagctttttctgctggcttcttctca 40795658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 41670535 - 41670290
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  41670535 tctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgc 41670436  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcggcagaggaagcttcctttgggatcttcttct 218  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||||||| |    
T  41670435 ttgagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttcttcttgtcggtggaggatgcttcctttgggatcttctttt 41670336  T
Q  219 ccgctttggttttctctgcgggagctttttctgctggcttcatctc 264  Q
    | ||||||||||||||||| || || || |||||||||||| ||||    
T  41670335 cggctttggttttctctgctggcgccttctctgctggcttcttctc 41670290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 29391592 - 29391455
Alignment:
Q  28 ttcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaacc 127  Q
    |||||||||||| |||||||| || |||||||||||||||||||| || |||||||| |||   || ||||| || |||||||||||||| |||||||||    
T  29391592 ttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctatatcaggatgaacctgtttgagaacc 29391493  T
Q  128 ttgaagatgtagatcttgtaggtttctacgctcttctt 165  Q
    ||||||||||| ||||| |||||||| |||||||||||    
T  29391492 ttgaagatgtaaatcttataggtttcaacgctcttctt 29391455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 34662184 - 34662348
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||| ||||| |||||||||||||| || || |||||||||||||||||||| || ||||| || |||||||||||||| |||||||| ||||| ||     
T  34662184 tctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaatgtcagggtgaacttgt 34662283  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 183  Q
    || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  34662284 ttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttcttcttctt 34662348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 26434159 - 26433995
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||| ||     
T  26434159 tctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctggatgaacttgt 26434060  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 183  Q
    || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26434059 ttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26433995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 23402209 - 23402042
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  23402209 tctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgc 23402110  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc 186  Q
    || ||||| |||||||||||||||||||| ||||||||  |||||||  ||||||| |||||||||||    
T  23402109 ttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttcttgtc 23402042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 23885962 - 23885798
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  23885962 tctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgc 23885863  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 183  Q
    || ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| ||||||||    
T  23885862 ttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt 23885798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 26832870 - 26832706
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| |||||||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| || ||||| ||     
T  26832870 tctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgt 26832771  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 183  Q
    || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26832770 ttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26832706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 23415852 - 23416013
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || |||||||||    
T  23415852 tctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacctgc 23415951  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttctt 180  Q
    || ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| |||||    
T  23415952 ttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttctt 23416013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 23453515 - 23453679
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| ||     
T  23453515 tctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagataccaatgtctgggtgaacatga 23453614  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 183  Q
    || ||||| |||||||||||||||||||| ||||||||  |||||||| ||||||| ||||||||    
T  23453615 ttcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttcttcttctt 23453679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 23868867 - 23868700
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||| || |||||||||    
T  23868867 tctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacctgc 23868768  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc 186  Q
    || ||||| |||||||||||||||||||| ||||| ||  |||||||| ||||||| |||||||||||    
T  23868767 ttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttcttcttcttgtc 23868700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 26435939 - 26435775
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||| ||||| |||| ||| ||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| || ||||| ||     
T  26435939 tctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaatgtctgggtgaacttgt 26435840  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 183  Q
    || |||||||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||    
T  26435839 ttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttcttcttctt 26435775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 23408683 - 23408850
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| ||||| |||||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| || ||||| ||     
T  23408683 tctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaacttgt 23408782  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtc 186  Q
    || ||||| |||||||||||||||||||| ||||||||  |||||||  ||||||| |||||||||||    
T  23408783 ttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttcttcttcttgtc 23408850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 24307358 - 24307194
Alignment:
Q  19 tctggatgattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgc 118  Q
    |||||||||||| ||||| || ||||| || || |||||||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||| ||     
T  24307358 tctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgt 24307259  T
Q  119 ttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttctt 183  Q
    || |||||||||||||| ||||||||||| ||||| ||  |||||||| ||||||| ||||||||    
T  24307258 ttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttcttcttctt 24307194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 40180420 - 40180581
Alignment:
Q  26 gattcctgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaa 125  Q
    |||||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| || ||||    
T  40180420 gattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgatatcaggatgaacctgtttcagaa 40180519  T
Q  126 ccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctttttcttcttgtcg 187  Q
    ||||||||||||| |||||||||||||| ||||| |||||  ||||||| ||||||||||||    
T  40180520 ccttgaagatgtatatcttgtaggtttcaacgcttttcttcgttctcttcttcttcttgtcg 40180581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 29684822 - 29684676
Alignment:
Q  32 tgagcgagcttctcaaaaatgtcattgatgaaactgttcatgattcccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaaccttga 131  Q
    |||||||| |||| ||| || || || | ||||||||| || | ||||||||| || ||||| | ||| ||| |||||||||| || |||||||||||||    
T  29684822 tgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaaccttga 29684723  T
Q  132 agatgtagatcttgtaggtttctacgctcttcttgtttctctttttc 178  Q
    | || || |||||||||||||| | ||| |||||   ||||||||||    
T  29684722 atatatatatcttgtaggtttcaatgcttttctttgatctctttttc 29684676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University