View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2306_low_19 (Length: 247)
Name: NF2306_low_19
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_low_19 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1652 (2 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1176 (3 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 165076 - 165319
Alignment:
| Q |
1 |
caccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctccggtacctctgaatagtgctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
165076 |
caccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctcc |
165175 |
T |
|
| Q |
101 |
ctctccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcct |
200 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
165176 |
ctctccttcaccgtctgctttctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcct |
165275 |
T |
|
| Q |
201 |
gctgctgctccttctgtgactccatcatcgatctctgctcctcc |
244 |
Q |
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|||||||||||| |||||||||||| ||||||||| ||||||| |
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| T |
165276 |
gctgctgctcctgctgtgactccatggtcgatctctactcctcc |
165319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 165283 - 165349
Alignment:
| Q |
130 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
196 |
Q |
| |
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|||||||||| |||||| | ||||||||| |||||||||||||||||||||||| | |||||||| |
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| T |
165283 |
ctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc |
165349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14248650 - 14248407
Alignment:
| Q |
1 |
caccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctccggtacctctgaatagtgctcc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14248650 |
caccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctcc |
14248551 |
T |
|
| Q |
101 |
ctctccttcaccgtctgcttcctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcct |
200 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14248550 |
ctctccttcaccgtctgctttctctggttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcct |
14248451 |
T |
|
| Q |
201 |
gctgctgctccttctgtgactccatcatcgatctctgctcctcc |
244 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| ||||||| |
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|
| T |
14248450 |
gctgctgctcctgctgtgactccatggtcgatctctactcctcc |
14248407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 60 - 244
Target Start/End: Complemental strand, 14317165 - 14316969
Alignment:
| Q |
60 |
tcacaagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctg------------tcgctccat |
147 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14317165 |
tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat |
14317066 |
T |
|
| Q |
148 |
cctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactccatcatcgatctctgctcctcc |
244 |
Q |
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| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
14317065 |
catggatctctaccccaccatctcaaggaccatcgcctactatttctccttctgctgctgctcctgatgtgactccatcatcgatctctactcctcc |
14316969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 14248443 - 14248377
Alignment:
| Q |
130 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
196 |
Q |
| |
|
|||||||||| |||||| | ||||||||| |||||||||||||||||||||||| | |||||||| |
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| T |
14248443 |
ctcctgctgtgactccatggtcgatctctactcctccatctcaaggaccatcgcctgcgatttctcc |
14248377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14317197 - 14317161
Alignment:
| Q |
1 |
caccatcatccccccagtcttctccgtttccatcacc |
37 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |
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| T |
14317197 |
caccatcatcacccaagtcttctccgtttccatcacc |
14317161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 43 - 293
Alignment:
| Q |
1 |
caccatcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctccggtacctctgaatagtgctcc |
100 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||| |
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| T |
43 |
caccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtaactgtgaatagtgctcc |
142 |
T |
|
| Q |
101 |
ctctccttcaccgtctgcttcctctggtt------------ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctact |
188 |
Q |
| |
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|||| ||| | || ||||||| ||||||| ||||||||||| ||||||| | ||||||||| ||||||||||||| |||||||||||| |
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| T |
143 |
ctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctccatcgtcgatctctactcctccatctcaagtaccatcgcctacg |
242 |
T |
|
| Q |
189 |
at---ttctcctcctgctgctgctccttctgtgactccatcatcgatctct |
236 |
Q |
| |
|
|| |||||||||||||||| ||||| |||| ||||||| ||||||||| |
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|
| T |
243 |
atttcttctcctcctgctgcttctcctgctgtcgctccatcgtcgatctct |
293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 263 - 379
Alignment:
| Q |
128 |
ttctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactccatca |
227 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
263 |
ttctcctgctgtcgctccatcgtcgatctctacccctccatctcaagcaccatcgcctacgatttctcctcttgctgccgctcctgctgtgactccatcg |
362 |
T |
|
| Q |
228 |
tcgatctctgctcctcc |
244 |
Q |
| |
|
||||| ||| ||||||| |
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|
| T |
363 |
tcgatatctactcctcc |
379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 3762 - 3543
Alignment:
| Q |
5 |
atcatccccccagtcttctccgtttccatcacctgctatttctccctccgctgactcacaagtggcgtcttctccggtacctctgaatagtgctccctct |
104 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
3762 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctctgaatagtgctccctct |
3663 |
T |
|
| Q |
105 |
ccttcaccgtctgcttcctctggtt------------ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactattt |
192 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||| ||||||| | |||||||| ||||||| |||||| |||||||||||| |||| |
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|
| T |
3662 |
tcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtcactccatcgtcgatctctatccctccaactcaagcaccatcgcctacaattt |
3563 |
T |
|
| Q |
193 |
ctcctcctgctgctgctcct |
212 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
3562 |
ttactccctctgctgctcct |
3543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 3532 - 3466
Alignment:
| Q |
130 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
196 |
Q |
| |
|
|||||||||| ||||||| | ||||||||| ||||||||||||| |||| ||||| | |||||||| |
|
|
| T |
3532 |
ctcctgctgtgactccatcgtcgatctctactcctccatctcaagcaccaacgcctgcgatttctcc |
3466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 46 - 160
Alignment:
| Q |
130 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctccttctgtgactccatcatc |
229 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
46 |
ctcctgttgtcgatccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcctcctgctgctgctcctgctgtgactccatcatc |
145 |
T |
|
| Q |
230 |
gatctctgctcctcc |
244 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
146 |
gatctctactcctcc |
160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 1265 - 1320
Alignment:
| Q |
7 |
catccccccagtcttctccgtttccatcacctgctatttctccctccgctgactca |
62 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
|
|
| T |
1265 |
catcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca |
1320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 124 - 190
Alignment:
| Q |
130 |
ctcctgctgtcgctccatcctggatctctacccctccatctcaaggaccatcgcctactatttctcc |
196 |
Q |
| |
|
|||||||||| ||||||| | ||||||||| ||||||||||||| |||||||||| | |||||||| |
|
|
| T |
124 |
ctcctgctgtgactccatcatcgatctctactcctccatctcaagcaccatcgcctgcgatttctcc |
190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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