View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2306_low_20 (Length: 238)
Name: NF2306_low_20
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 26956953 - 26956742
Alignment:
| Q |
18 |
ctatgccttatggtaatcttcatcaactcttcaaagcttaatttaatccattttcaatttaattgaccagtacaagattatcaatacgaatttatttgtt |
117 |
Q |
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| T |
26956953 |
ctatgccttatggtaatcttcatcaactcttcaaagcttaatttaatccattttcaatttaattgaccagtacaatattatcaatacgaatttatttgtt |
26956854 |
T |
|
| Q |
118 |
tgcagcattatacctcatcacagtgtccgttttggctggcttctggggacagttctttgttagaaaactagttgcatttcttgggagggcatctgtcatt |
217 |
Q |
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| T |
26956853 |
tgcagcattatacctcatcacagtgtctgttttggctggcttctggggacagttctttgttagaaaactagttgcatttcttgggagggcatctgtcatt |
26956754 |
T |
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| Q |
218 |
gtattcatcctc |
229 |
Q |
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|||||||||||| |
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| T |
26956753 |
gtattcatcctc |
26956742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 41777448 - 41777561
Alignment:
| Q |
116 |
tttgcagcattatacctcatcacagtgtccgttttggctggcttctggggacagttctttgttagaaaactagttgcatttcttgggagggcatctgtca |
215 |
Q |
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||||||||||| |||||| |||||||||| |||||||||||||| ||||||||| ||||| |||||| | || | ||||||| || || || ||| |
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| T |
41777448 |
tttgcagcattgtacctcttcacagtgtctgttttggctggctttgtgggacagttatttgtaagaaaattgcttagaattcttggaagagcctcaatca |
41777547 |
T |
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| Q |
216 |
ttgtattcatcctc |
229 |
Q |
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| T |
41777548 |
ttgtattcatcctc |
41777561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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