View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2306_low_23 (Length: 219)

Name: NF2306_low_23
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2306_low_23
NF2306_low_23
[»] chr6 (3 HSPs)
chr6 (14-210)||(14248153-14248349)
chr6 (14-210)||(14316691-14316884)
chr6 (14-210)||(14253963-14254153)
[»] scaffold0902 (2 HSPs)
scaffold0902 (14-210)||(3209-3405)
scaffold0902 (66-119)||(3483-3536)
[»] scaffold1652 (2 HSPs)
scaffold1652 (14-210)||(467-660)
scaffold1652 (82-121)||(277-316)
[»] scaffold1176 (2 HSPs)
scaffold1176 (46-210)||(277-441)
scaffold1176 (14-127)||(1365-1478)
[»] scaffold1801 (1 HSPs)
scaffold1801 (14-210)||(132-337)
[»] chr4 (8 HSPs)
chr4 (70-208)||(37244886-37245021)
chr4 (14-121)||(37241923-37242033)
chr4 (141-205)||(37252947-37253011)
chr4 (140-210)||(37232696-37232766)
chr4 (136-210)||(37257067-37257141)
chr4 (84-135)||(37241876-37241927)
chr4 (81-122)||(37245128-37245169)
chr4 (70-122)||(37242111-37242163)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 14248349 - 14248153
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa 113  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248349 ttcaccgtctgccatcaactctccatcatctcctcctcaagctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa 14248250  T
Q  114 gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14248249 gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgt 14248153  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 14316884 - 14316691
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa 113  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| || || ||||||||  |||||||||||||||| ||||||    
T  14316884 ttcaccgtctgccatcaactctccatcatctcctcctcaagcttcccccgcagccactccggccatcactccatcatcgatctctacccctccttctaaa 14316785  T
Q  114 gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    ||||||||||||||||| ||   || |||||||||||||||||||||  ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  14316784 gcaccatcaacgtccacgaa---cgacgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgt 14316691  T

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Target: chr6; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 14254153 - 14253963
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa 113  Q
    ||||| ||||||||||||||||||| |||||||||   | ||||  || ||||| |||||||| |||||||||||| ||||||||| |||||||||||||    
T  14254153 ttcaccgtctgccatcaactctccaccatctcctc---aagcttcacctgcagctactcctgctattactccatcgtcgatctctatccctccatctaaa 14254057  T
Q  114 gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    | |||||||||||||||||||| ||||||   ||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  14254056 gtaccatcaacgtccacaaacgacgccgc---tttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgt 14253963  T

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Target: scaffold0902 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 3405 - 3209
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa 113  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  3405 ttcaccgtctgccatcaactctccaccatctcctcctcatgcttccccagcagccgctcctgccattactccatcggcgatctctacccctccatctaaa 3306  T
Q  114 gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    ||||||||||| | ||||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||    
T  3305 gcaccatcaacattcacaaacgctggcaccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgt 3209  T

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Target: scaffold0902; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 3536 - 3483
Alignment:
Q  66 gccactcctgcaattactccatcggcgatctctacccctccatctaaagcacca 119  Q
    |||||||||||  | ||||||||| |||||||||| ||||||||| ||||||||    
T  3536 gccactcctgctgtgactccatcgtcgatctctactcctccatctcaagcacca 3483  T

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Target: scaffold1652 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 467 - 660
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa 113  Q
    ||||| ||||||||||||||||||| |||||||||   | |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  467 ttcaccgtctgccatcaactctccaccatctcctc---aagcttcccccgcagccactcctgctattactccatcggcgatctctaccccaccatctaaa 563  T
Q  114 gcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||    
T  564 gcaccatcaacgtccacaaacgctgccaccactttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgt 660  T

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Target: scaffold1652; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 121
Target Start/End: Original strand, 277 - 316
Alignment:
Q  82 ctccatcggcgatctctacccctccatctaaagcaccatc 121  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  277 ctccatcgtcgatctctacccctccatctcaagcaccatc 316  T

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Target: scaffold1176 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 277 - 441
Alignment:
Q  46 ctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgc 145  Q
    ||||||| |||| |||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  277 ctcctcaagcttcccccgcagccacccctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgc 376  T
Q  146 tttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  377 tttgaacagatttacagttgccggatctactgctgtcgtggttttcattgctgctttgatgatgt 441  T

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Target: scaffold1176; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 1365 - 1478
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctcta-cccctccatctaa 112  Q
    ||||| || ||||||||||| |||| |||||||||||||||||| ||||||| |  |||| || | |||| ||||| | ||||||| |||||||||||||    
T  1365 ttcaccgtgtgccatcaactgtccaccatctcctcctcatgcttcccccgcaacagctccggctaatact-catcgtcaatctctaccccctccatctaa 1463  T
Q  113 agcaccatcaacgtc 127  Q
    ||||| |||||||||    
T  1464 agcacaatcaacgtc 1478  T

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Target: scaffold1801 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 132 - 337
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcatgctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatctaaa 113  Q
    ||||| |||||||||||||||||||  |||||||||||||||||  || |||||  ||||||| |||||||||||| |||||||||||||||||||||||    
T  132 ttcaccgtctgccatcaactctccacaatctcctcctcatgcttcgccagcagctgctcctgccattactccatcgtcgatctctacccctccatctaaa 231  T
Q  114 gcaccatca---------acgtccacaaacgccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttga 204  Q
    ||| |||||         || ||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||  ||||   |||||||||||    
T  232 gcatcatcaacatcacagacatccacaaacgctgctgccgctttgaacagatttacagttgccggatctgctgctgtcgtccttttaactgctgctttga 331  T
Q  205 tgatgt 210  Q
    ||||||    
T  332 tgatgt 337  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 37245021 - 37244886
Alignment:
Q  70 ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacgccgccgccgctttgaacagatttacagttgccgg 169  Q
    ||||||| ||||||||| || | ||||||||||||||||||||| |||||||||| ||||||||   || ||||||||| |||||||| || ||||||||    
T  37245021 ctcctgctattactccaacgtctatctctacccctccatctaaatcaccatcaacatccacaaa---cggcgccgctttcaacagattcactgttgccgg 37244925  T
Q  170 atctactgctgtcgtggttttcgttgctgctttgatgat 208  Q
    |||| ||||||| |||||||||| ||||| |||||||||    
T  37244924 atctgctgctgttgtggttttcgctgctgttttgatgat 37244886  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 37242033 - 37241923
Alignment:
Q  14 ttcactgtctgccatcaactctccatcatctcctcctcat---gctttccccgcagccactcctgcaattactccatcggcgatctctacccctccatct 110  Q
    ||||| ||| ||||||||||||||| |||||||||||| |   || | ||| || ||| ||||||| |||||||||||| | |||||||| |||||| ||    
T  37242033 ttcaccgtccgccatcaactctccaccatctcctcctcctcacgcctcccctgctgccgctcctgctattactccatcgtcaatctctactcctccaact 37241934  T
Q  111 aaagcaccatc 121  Q
    |||||||||||    
T  37241933 aaagcaccatc 37241923  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 37253011 - 37252947
Alignment:
Q  141 gccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgat 205  Q
    |||||||||||||||||||| |||||||||||| ||||||| ||||||||||  || ||||||||    
T  37253011 gccgctttgaacagatttaccgttgccggatctgctgctgtagtggttttcgccgccgctttgat 37252947  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 37232766 - 37232696
Alignment:
Q  140 cgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    |||||||||||| ||||| || |||||||||||| ||||||| ||| |||||| ||| |||||||||||||    
T  37232766 cgccgctttgaatagattcaccgttgccggatctgctgctgttgtgattttcgctgccgctttgatgatgt 37232696  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 37257141 - 37257067
Alignment:
Q  136 ccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggttttcgttgctgctttgatgatgt 210  Q
    ||||||||||||| |||||||| || ||||| |||||| |||||||  |||||||||  ||||||||||||||||    
T  37257141 ccgccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgt 37257067  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 37241927 - 37241876
Alignment:
Q  84 ccatcggcgatctctacccctccatctaaagcaccatcaacgtccacaaacg 135  Q
    |||||| |||||||||| |||||| ||||||||||||||||| |||||||||    
T  37241927 ccatcgtcgatctctactcctccaactaaagcaccatcaacgcccacaaacg 37241876  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 37245169 - 37245128
Alignment:
Q  81 actccatcggcgatctctacccctccatctaaagcaccatca 122  Q
    ||||||||| |||||||||| ||||||||| |||||||||||    
T  37245169 actccatcgtcgatctctactcctccatctcaagcaccatca 37245128  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 37242163 - 37242111
Alignment:
Q  70 ctcctgcaattactccatcggcgatctctacccctccatctaaagcaccatca 122  Q
    |||||||| ||||||||| | ||||||| || ||||||||| |||||||||||    
T  37242163 ctcctgcagttactccattgtcgatctcaactcctccatctcaagcaccatca 37242111  T

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