View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2306_low_26 (Length: 203)
Name: NF2306_low_26
Description: NF2306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2306_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 7045383 - 7045570
Alignment:
| Q |
1 |
acttcagcatcatagatcacataattttggaggccacatatgcttcagggtatacaaccaattttaatttattttgaaaatgtcaattttgtgtgcgctt |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
7045383 |
acttctgcatcatagatcacataattttggagtccacatatgcttcagggtatacaaccaattttaatttattctgtaaatgtcaattttgtgtgtgctt |
7045482 |
T |
|
| Q |
101 |
ctttacatgtctaatattttctgacgtgaacttatcaaaaacggaaaaactctaacgtgagtagagatgcatgcttaaacacaaattt |
188 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7045483 |
ctttacatgtctaatattttatgacgtgaacttatcaaaaacggaaaaactctaacgtgagtagagatgcatgcttaaacacaaattt |
7045570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7031067 - 7031258
Alignment:
| Q |
1 |
acttcagcatcatagatcacataattttggaggccacatatgcttcagggtatacaaccaattttaatttattttgaaaatgtcaattttgtgtgcgctt |
100 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
7031067 |
acttctgcatcacagatcacataattttggagtccacatatgcttcagggtatacaaccaattttaatttattttgtaaatgtcaattttgtgtgtgctt |
7031166 |
T |
|
| Q |
101 |
ctttacatgtctaatattttctgacgtgaacttatcaaaaacggaaaaactctaacgtgagtagagatgcatgcttaaacacaaattttcat |
192 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7031167 |
ctttacacgtctaatattttctgacgtgaacttataaaaaacagaaaaactctaacatgagtagagatgcatgcttaaacacaaattttcat |
7031258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7038670 - 7038741
Alignment:
| Q |
1 |
acttcagcatcatagatcacat-aattttggaggccacatatgcttcagggtatacaaccaattttaatttatt |
73 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||| |||||| ||||||| |||| || |||||||||||||||| |
|
|
| T |
7038670 |
acttctgcatcatagatcacatgaatttcggagtccacat--gcttcagagtatgcagccaattttaatttatt |
7038741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University