View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2307_high_2 (Length: 295)
Name: NF2307_high_2
Description: NF2307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2307_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 35733388 - 35733645
Alignment:
| Q |
1 |
aaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcagccagagccattttgatgtatgcacaatgcacaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35733388 |
aaaataaggttaaactattcctcctgtcctgtaacaagtcaacacttggtctacattttaatcag-------------gatgtatgcacaatgcacaat- |
35733473 |
T |
|
| Q |
101 |
cacaatacgattaaaaagtttgagcaaagaaaataaggtaggatacatacaatnnnnnnngcaacctctcttcaagttcactgagccagtaaatcacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35733474 |
------acgattaaaaagtttgagcaaagaaaataaggtaggatacatacaataaaaaa-gcaacctctcttcaagttcactgagccagtaaatcacaaa |
35733566 |
T |
|
| Q |
201 |
gacactcccnnnnnnnttaaattgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctac |
279 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35733567 |
gacactcccaaaaaaattaaattgtagcaatcatacactttattggaatttacataagtcatttgttaaggctagctac |
35733645 |
T |
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