View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2307_low_3 (Length: 238)

Name: NF2307_low_3
Description: NF2307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2307_low_3
NF2307_low_3
[»] chr5 (22 HSPs)
chr5 (107-229)||(4361294-4361416)
chr5 (38-108)||(36187793-36187863)
chr5 (38-107)||(16799239-16799308)
chr5 (38-106)||(27079129-27079197)
chr5 (38-106)||(38869279-38869347)
chr5 (37-106)||(15480006-15480075)
chr5 (38-106)||(7671050-7671118)
chr5 (38-106)||(16198709-16198777)
chr5 (38-106)||(31194528-31194596)
chr5 (38-106)||(22986473-22986541)
chr5 (38-105)||(28822253-28822320)
chr5 (41-108)||(40389451-40389518)
chr5 (38-107)||(9364408-9364477)
chr5 (37-106)||(16591990-16592059)
chr5 (38-102)||(19523316-19523380)
chr5 (38-106)||(27924199-27924267)
chr5 (38-106)||(31881348-31881416)
chr5 (38-101)||(2275007-2275070)
chr5 (37-87)||(34756300-34756350)
chr5 (38-103)||(30854446-30854511)
chr5 (38-85)||(7338116-7338163)
chr5 (38-106)||(23283943-23284011)
[»] chr4 (30 HSPs)
chr4 (38-107)||(54083159-54083228)
chr4 (38-106)||(37777140-37777208)
chr4 (38-106)||(34027700-34027768)
chr4 (37-107)||(55255378-55255448)
chr4 (38-107)||(16882312-16882381)
chr4 (38-107)||(32128706-32128775)
chr4 (38-106)||(32915507-32915575)
chr4 (38-100)||(38352189-38352251)
chr4 (37-106)||(2790659-2790728)
chr4 (38-106)||(40089646-40089714)
chr4 (38-106)||(54780900-54780968)
chr4 (38-84)||(1105653-1105699)
chr4 (38-87)||(43455468-43455517)
chr4 (39-87)||(10428135-10428183)
chr4 (38-106)||(24969718-24969786)
chr4 (39-106)||(23508427-23508494)
chr4 (39-102)||(47129109-47129172)
chr4 (37-87)||(35465226-35465276)
chr4 (38-107)||(17679521-17679590)
chr4 (37-106)||(34768492-34768561)
chr4 (37-81)||(2975367-2975411)
chr4 (43-107)||(5128757-5128821)
chr4 (38-106)||(16845143-16845210)
chr4 (38-106)||(19498623-19498691)
chr4 (39-85)||(38209529-38209575)
chr4 (38-107)||(10979024-10979093)
chr4 (46-107)||(48209376-48209437)
chr4 (38-106)||(16922245-16922313)
chr4 (39-109)||(5893134-5893204)
chr4 (38-92)||(51964832-51964886)
[»] chr1 (27 HSPs)
chr1 (38-108)||(51607356-51607426)
chr1 (38-106)||(40501707-40501775)
chr1 (38-106)||(6889737-6889805)
chr1 (38-106)||(6891583-6891651)
chr1 (38-106)||(17169083-17169151)
chr1 (38-106)||(19955844-19955912)
chr1 (37-107)||(27906645-27906715)
chr1 (38-107)||(6771921-6771990)
chr1 (39-106)||(21740852-21740919)
chr1 (38-107)||(14146427-14146496)
chr1 (38-107)||(22865377-22865446)
chr1 (39-103)||(13913401-13913465)
chr1 (38-87)||(41697074-41697123)
chr1 (37-106)||(44655867-44655936)
chr1 (38-106)||(5027678-5027746)
chr1 (46-106)||(9172940-9173000)
chr1 (46-106)||(9180922-9180982)
chr1 (38-100)||(16140182-16140244)
chr1 (38-87)||(34247154-34247203)
chr1 (39-103)||(50881557-50881621)
chr1 (37-95)||(44895774-44895832)
chr1 (38-106)||(3406546-3406614)
chr1 (38-106)||(3440206-3440274)
chr1 (38-106)||(5316807-5316875)
chr1 (38-106)||(23185554-23185622)
chr1 (37-106)||(1366797-1366866)
chr1 (37-106)||(4971536-4971605)
[»] chr8 (14 HSPs)
chr8 (38-107)||(42600899-42600968)
chr8 (38-103)||(13534609-13534674)
chr8 (38-103)||(13624149-13624214)
chr8 (38-107)||(37430075-37430144)
chr8 (38-106)||(10917507-10917575)
chr8 (38-106)||(23606548-23606616)
chr8 (38-106)||(23798179-23798247)
chr8 (37-108)||(2952135-2952206)
chr8 (38-112)||(41879296-41879370)
chr8 (37-107)||(3048434-3048504)
chr8 (38-107)||(45475933-45476002)
chr8 (38-106)||(20003728-20003796)
chr8 (37-103)||(30883446-30883512)
chr8 (37-85)||(5860681-5860729)
[»] chr7 (17 HSPs)
chr7 (38-106)||(20091197-20091265)
chr7 (37-106)||(23550988-23551057)
chr7 (38-107)||(48983755-48983824)
chr7 (38-106)||(29077336-29077404)
chr7 (38-106)||(10329327-10329395)
chr7 (38-106)||(12596207-12596275)
chr7 (38-106)||(25010543-25010611)
chr7 (40-103)||(8171460-8171523)
chr7 (39-106)||(18776683-18776750)
chr7 (37-107)||(26254109-26254179)
chr7 (37-107)||(28749826-28749896)
chr7 (38-107)||(24525598-24525667)
chr7 (38-107)||(47984884-47984953)
chr7 (38-87)||(40357316-40357365)
chr7 (38-104)||(8239803-8239869)
chr7 (38-106)||(19692211-19692279)
chr7 (38-107)||(38414792-38414861)
[»] chr2 (18 HSPs)
chr2 (38-106)||(27506659-27506727)
chr2 (37-106)||(4506009-4506078)
chr2 (37-106)||(8906996-8907065)
chr2 (38-106)||(24410555-24410623)
chr2 (38-106)||(26716245-26716313)
chr2 (37-107)||(40636252-40636322)
chr2 (37-106)||(3155332-3155401)
chr2 (39-103)||(6965122-6965186)
chr2 (38-106)||(8327733-8327801)
chr2 (38-106)||(29939781-29939849)
chr2 (39-106)||(12337365-12337432)
chr2 (38-108)||(10762483-10762553)
chr2 (39-107)||(3953121-3953189)
chr2 (37-87)||(1396636-1396686)
chr2 (38-106)||(9046145-9046213)
chr2 (38-100)||(5952642-5952704)
chr2 (38-103)||(34694090-34694155)
chr2 (38-103)||(34716502-34716567)
[»] chr3 (24 HSPs)
chr3 (38-108)||(50939150-50939220)
chr3 (38-106)||(47467804-47467872)
chr3 (38-107)||(54407072-54407141)
chr3 (38-106)||(8073257-8073325)
chr3 (38-106)||(34290554-34290622)
chr3 (38-102)||(37168487-37168551)
chr3 (38-106)||(48720429-48720497)
chr3 (37-107)||(27078485-27078555)
chr3 (37-107)||(27084282-27084352)
chr3 (44-106)||(29620364-29620426)
chr3 (38-103)||(36606084-36606149)
chr3 (37-106)||(38681011-38681080)
chr3 (38-106)||(21582892-21582960)
chr3 (37-107)||(50258541-50258611)
chr3 (37-106)||(36715942-36716011)
chr3 (46-106)||(43207157-43207217)
chr3 (38-102)||(44708596-44708660)
chr3 (38-87)||(18372602-18372651)
chr3 (37-106)||(53506802-53506870)
chr3 (37-106)||(54619121-54619190)
chr3 (37-100)||(48157247-48157310)
chr3 (39-106)||(42098922-42098989)
chr3 (39-105)||(3953816-3953882)
chr3 (38-70)||(9878642-9878674)
[»] scaffold0070 (1 HSPs)
scaffold0070 (38-107)||(1459-1528)
[»] chr6 (14 HSPs)
chr6 (38-106)||(27788608-27788676)
chr6 (38-107)||(27314096-27314165)
chr6 (38-106)||(17354074-17354142)
chr6 (39-104)||(1155767-1155832)
chr6 (37-106)||(13727317-13727386)
chr6 (37-106)||(21280664-21280733)
chr6 (38-107)||(30832442-30832511)
chr6 (38-106)||(20711638-20711706)
chr6 (38-106)||(24710914-24710982)
chr6 (37-108)||(21479614-21479685)
chr6 (37-87)||(33774237-33774287)
chr6 (47-100)||(19987277-19987330)
chr6 (38-98)||(235151-235211)
chr6 (38-85)||(28075906-28075953)
[»] scaffold0039 (1 HSPs)
scaffold0039 (38-106)||(106655-106723)
[»] scaffold0001 (1 HSPs)
scaffold0001 (38-106)||(183176-183244)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 107 - 229
Target Start/End: Original strand, 4361294 - 4361416
Alignment:
Q  107 caaatactaacacgtcaaaatcaataataatttgaaaaaacgatatgattaagtataataacatgtgatagtgttgtgttagtcttgttcacacgcgaat 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4361294 caaatactaacacgtcaaaatcaataataattttaaaaaacgatatgattaagtataataacatgtgatagtgttgtgttagtcttgttcacacgcgaat 4361393  T
Q  207 atagagagcgtctttgatgatgt 229  Q
    ||||| ||| |||||||||||||    
T  4361394 atagaaagcatctttgatgatgt 4361416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 36187863 - 36187793
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgca 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||||    
T  36187863 gttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctgca 36187793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 16799308 - 16799239
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  16799308 gttttgattttatcactgacatcttttcattcccagagccgagcctccgaattcttagggacggccctgc 16799239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 27079129 - 27079197
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||    
T  27079129 gttttgattttatcactggcctcttttcattctcagagccgagcctccgaattctcagggacggccctg 27079197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 38869347 - 38869279
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  38869347 gttttgattttataactgacctcttttcattcccagagccgagcctccgaattcttagggacggccctg 38869279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 15480075 - 15480006
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||| || | |||||||||||||    
T  15480075 tgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 15480006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 7671050 - 7671118
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||| |||||||||||    
T  7671050 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttaaggacggccctg 7671118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 16198777 - 16198709
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||| |||||||    
T  16198777 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggaaggccctg 16198709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 31194596 - 31194528
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  31194596 gttttgattttatcactggtctcttttcattcccagagccgagcctccgaattttcagggacggccctg 31194528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 22986541 - 22986473
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||| || | | |||||||||||    
T  22986541 gttttgattttatcactggcctcttttcattctcagagctgagcctccgaattctcacggacggccctg 22986473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 28822320 - 28822253
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccct 105  Q
    ||||||||||||||||| |||||||||||||| || |||||| ||||||| || ||||||||||||||    
T  28822320 gttttgattttatcactaacctcttttcattcccaaagccgaacctccgaattcttagggacggccct 28822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 40389518 - 40389451
Alignment:
Q  41 ttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgca 108  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||| | |||||||    
T  40389518 ttgattttatcactgacatcttttcattcccagagccgagcctccgaattcttagggatgaccctgca 40389451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 9364408 - 9364477
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||||||| || ||||||  ||||||||    
T  9364408 gttttgattttatcactggcctcttttcattcccagagctgagcctccgaattcttaggggtggccctgc 9364477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 16592059 - 16591990
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||| | || | | |||||||||||    
T  16592059 tgttttgattttatcattggcctcttttcattctcagagccgagcctccaaattctcaaggacggccctg 16591990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 19523316 - 19523380
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggc 102  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||| || | |||||||||    
T  19523316 gttttgattttatcactggtctcttttcattcccagagccgagcctccgaattctcagggacggc 19523380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 27924199 - 27924267
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| |||| || ||||  |||||||||    
T  27924199 gttttgattttatcactggcctcttttcattctcagagtcgagcccccgaattcttagaaacggccctg 27924267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 31881416 - 31881348
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||  | |||| |||||||||||||    
T  31881416 gttttgattttattactgaccacttttcattcccagagccgagcctctaaattttcagggacggccctg 31881348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 2275007 - 2275070
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacgg 101  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||| || | ||||||||    
T  2275007 gttttgattttatcactggcctcttttcattcccagaaccgagcctccgaattctcagggacgg 2275070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 34756350 - 34756300
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||||||    
T  34756350 tgttttgattttatcactggcctcttttcatttccagagccgagcctccga 34756300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 30854446 - 30854511
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    ||||| |||||||| ||||||| ||||||||| ||||||||||||||| | || | ||||||||||    
T  30854446 gttttaattttatcgctgaccttttttcattcccagagccgagcctccaaattatcagggacggcc 30854511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 7338116 - 7338163
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctcc 85  Q
    ||||||||||||||  ||||||||||||||||  ||||||||||||||    
T  7338116 gttttgattttatccttgacctcttttcattcctagagccgagcctcc 7338163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 23284011 - 23283943
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| |||||||||||||  | | | ||||||| || || | |||||||||||||    
T  23284011 gttttgattttatcactggcctcttttcattcctaaaactgagcctctgaattctcagggacggccctg 23283943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 54083228 - 54083159
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54083228 gttttgattttatcactgacctcttttcattctcagagccgagcctccgaatttttagggacggccctgc 54083159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 37777208 - 37777140
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||    
T  37777208 gttttgattttatcactgacctcttttcattcccagagccgagcctccgaatttttagggacagccctg 37777140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 34027700 - 34027768
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  34027700 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 34027768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 55255378 - 55255448
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| || | ||||||||||||||    
T  55255378 tgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctcagggacggccctgc 55255448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 16882381 - 16882312
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||| || ||||||||||||||||    
T  16882381 gttttgattttatcactgacttcttttcattcctagagccgagcctccgaattcttagggacggccctgc 16882312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 32128706 - 32128775
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||| | || ||||||||||||||||    
T  32128706 gttttgattttatcactgaccttttttcattcccagagccgagcctccaaattcttagggacggccctgc 32128775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 32915507 - 32915575
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || | |||||||||||||    
T  32915507 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 32915575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 38352251 - 38352189
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacg 100  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||||    
T  38352251 gttttgattttatcactgatctcttttcattcccagagccgagcctccgaattcttagggacg 38352189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 2790728 - 2790659
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||||||| || |||| ||||||||||    
T  2790728 tgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagagacggccctg 2790659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 40089646 - 40089714
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||| |||||||||||  |||||||||||||||| || ||||||||| |||||    
T  40089646 gttttgattttatcactgacttcttttcattccaagagccgagcctccgaattcttagggacgaccctg 40089714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 54780900 - 54780968
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||||||||| || | |||||||||||||    
T  54780900 gttttgattttatcactggcctcttttcattcccagagccaagcctccgaattctcagggacggccctg 54780968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 1105653 - 1105699
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctc 84  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  1105653 gttttgattttatcactgacctcttttcattcccagagccgagcctc 1105699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 43455517 - 43455468
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  43455517 gttttgattttatcactgacctcttttcattcccagagtcgagcctccga 43455468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 10428183 - 10428135
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10428183 ttttgattttagcactgacctcttttcattcccagagccgagcctccga 10428135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 24969718 - 24969786
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||| ||||||||||  ||||||||||||| ||||| ||||||||||| || |||||||||||||||    
T  24969718 gttttgtttttatcactagcctcttttcattcccagagtcgagcctccgaattcttagggacggccctg 24969786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 23508494 - 23508427
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||| |||| | |||||| ||||    
T  23508494 ttttgattttatcactggcctcttttcattcccaaagccgagcctccgaattttcatggacggtcctg 23508427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 47129109 - 47129172
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggc 102  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||| || | |||||||||    
T  47129109 ttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggc 47129172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 35465226 - 35465276
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||    
T  35465226 tgttttgattttatcactgacctcttttcattcccagaatcgagcctccga 35465276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 17679521 - 17679590
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||  |||||||||||| |||| |||||||||||| || | || |||||||||||    
T  17679521 gttttgattttatcactggtctcttttcattcccagaaccgagcctccgaattctcagagacggccctgc 17679590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 34768561 - 34768492
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||  ||||||||||||| || |||||||||||||| || | ||||||| |||||    
T  34768561 tgttttgattttatcactagcctcttttcattcccaaagccgagcctccgaattctcagggacgaccctg 34768492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 2975411 - 2975367
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagc 81  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||    
T  2975411 tgttttgattttatcattgacctcttttcattttcagagccgagc 2975367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 5128821 - 5128757
Alignment:
Q  43 gattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||| ||||||||||||| ||||||||||||||  | || | ||||||||||||||    
T  5128821 gattttatcactggcctcttttcattcccagagccgagcctctaaattctcagggacggccctgc 5128757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 16845143 - 16845210
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| | | ||||||||  ||||||||||||||||| || |||||||||||||||    
T  16845143 gttttgattttatcactggctt-ttttcatttccagagccgagcctccgaattcttagggacggccctg 16845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 19498623 - 19498691
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||| || ||| |||||||||  |||||||||||||||| || |||| ||||||||||    
T  19498623 gttttgattttatcattggcctgttttcattcctagagccgagcctccgaattcttagtgacggccctg 19498691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 38209575 - 38209529
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctcc 85  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||    
T  38209575 ttttgattttatcactggcctcttttcatttccagagccgagcctcc 38209529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 10979024 - 10979093
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||| |||||||||||||| ||||||  | ||||||| || | || |||||||||||    
T  10979024 gttttgattttatcactaacctcttttcattcccagagctaaacctccgaattctcagagacggccctgc 10979093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 48209376 - 48209437
Alignment:
Q  46 tttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||  ||||||||| || ||||||||||||||||| || | ||||||||||||||    
T  48209376 tttatcactggtctcttttcactcccagagccgagcctccgaattctcagggacggccctgc 48209437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 16922313 - 16922245
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||  |||||||||||| || || ||||||||| | || | |||||||||||||    
T  16922313 gttttgattttatcactggtctcttttcattcccaaagtcgagcctccaaattctcagggacggccctg 16922245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 5893134 - 5893204
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgcaa 109  Q
    |||| ||||||| || |||||||||||| |  ||||||||||||||| | ||| |||| ||||||||||||    
T  5893134 tttttattttattacggacctcttttcacttacagagccgagcctccaaatttgtaggaacggccctgcaa 5893204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 51964832 - 51964886
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttt 92  Q
    |||||||||||||||  | ||||||||||||| |||||||||| |||||| ||||    
T  51964832 gttttgattttatcatcggcctcttttcattcccagagccgagtctccgaatttt 51964886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 51607426 - 51607356
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgca 108  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  51607426 gttttgattttatcactgacctcttttcattcccagagccgagcctccgaatttttagggacggtcctgca 51607356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 40501775 - 40501707
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  40501775 gttttgattttatcactgacctcttttcattctcagagtcgagcctccgaattcttagggacggccctg 40501707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 6889737 - 6889805
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||    
T  6889737 gttttgattttatcactgacctcttttcattctcagaaccgagcctccgaattttcaaggacggccctg 6889805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 6891583 - 6891651
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||||||    
T  6891583 gttttgattttatcactgacctcttttcattctcagaaccgagcctccgaattttcaaggacggccctg 6891651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 17169083 - 17169151
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||||    
T  17169083 gttttgattttatcactgacctcttttcatttccagagccgagcctccgaattcttagggacggccctg 17169151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 19955844 - 19955912
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  19955844 gttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacagccctg 19955912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 27906715 - 27906645
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| || | ||||||||||||||    
T  27906715 tgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctcagggacggccctgc 27906645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 6771921 - 6771990
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || | ||||||||||||||    
T  6771921 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctgc 6771990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 21740919 - 21740852
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || | | |||||||||||    
T  21740919 ttttgattttatcactggcctcttttcattctcagagccgagcctccgaattctcaaggacggccctg 21740852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 14146427 - 14146496
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| |||||||||||||  |||||||||||||||| || | ||||||||||||||    
T  14146427 gttttgattttatcactggcctcttttcattccaagagccgagcctccgaattctcagggacggccctgc 14146496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 22865446 - 22865377
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||| || | ||||||||||||||    
T  22865446 gttttgattttatcattgacctcttttcattcccagagccgtgcctccgaattctcagggacggccctgc 22865377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 13913465 - 13913401
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||| || ||||||||||||    
T  13913465 ttttgattttatcactggcatcttttcattctcagagccaagcctccgaattcttagggacggcc 13913401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 41697123 - 41697074
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  41697123 gttttgattttatcactgacctcttttcattcccagagccgagcttccga 41697074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 44655867 - 44655936
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||  |||||||||||  ||||||||||||||||| || | |||||||||||||    
T  44655867 tgttttgattttatcactggtctcttttcatttccagagccgagcctccgaattctcagggacggccctg 44655936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 5027678 - 5027746
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| | ||| ||||||||||| || | |||||||||||||    
T  5027678 gttttgattttatcactggcctcttttcattccccgagtcgagcctccgaattctcagggacggccctg 5027746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 9173000 - 9172940
Alignment:
Q  46 tttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||| | ||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  9173000 tttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 9172940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 9180982 - 9180922
Alignment:
Q  46 tttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||| | ||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  9180982 tttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 9180922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 16140182 - 16140244
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacg 100  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||| || | |||||||    
T  16140182 gttttgattttatcaccggcctcttttcattcccagagccgagcctccgaattctcagggacg 16140244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 34247154 - 34247203
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  34247154 gttttgattttatcactgaccttttttcatttccagagccgagcctccga 34247203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 50881557 - 50881621
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    |||| |||||||||||| ||||||||||||  ||||||||||||||||| || | ||||||||||    
T  50881557 ttttaattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 50881621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 44895774 - 44895832
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttag 95  Q
    |||||||||||| |||| ||||||||||||||| |||| |||| ||||||| |||||||    
T  44895774 tgttttgattttttcaccgacctcttttcattcccagaaccgaacctccgaatttttag 44895832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 3406546 - 3406614
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||| |||||||||||||||||||||||||| | |||| |||||||| | || | |||||| ||||||    
T  3406546 gttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcagggacagccctg 3406614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 3440274 - 3440206
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||| |||||||||||||||||||||||||| | |||| |||||||| | || | |||||| ||||||    
T  3440274 gttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcagggacagccctg 3440206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 5316807 - 5316875
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||||||||||||||||  |  | ||||||||| | || | |||||||||||||    
T  5316807 gttttgattttatcactgacctcttttcattcctaaggtcgagcctccaaattctcagggacggccctg 5316875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 23185554 - 23185622
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| |||||||||| ||   ||||||||||||||| || | ||| |||||||||    
T  23185554 gttttgattttatcactggcctcttttcaatcctcgagccgagcctccgaattctcaggaacggccctg 23185622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 1366866 - 1366797
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||| | |||||||||| ||||||||||||| |||||| |||||||| | ||  ||| ||||||||||    
T  1366866 tgttttcaatttatcactggcctcttttcattcccagagctgagcctccaaattcgtagagacggccctg 1366797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 4971605 - 4971536
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||  |||||||||||| | || ||||||||| || || | |||||| ||||||    
T  4971605 tgttttgattttatcactggtctcttttcattccccgaaccgagcctcagaattctcagggacagccctg 4971536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 42600899 - 42600968
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||    
T  42600899 gttttgattttatcactgacctcttttcattttcagagccgagcctccgaattcttagggacggccctgc 42600968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 13534674 - 13534609
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  13534674 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattttcagggacggcc 13534609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 13624214 - 13624149
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  13624214 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattttcagggacggcc 13624149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 37430144 - 37430075
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || | ||||||||||||||    
T  37430144 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctgc 37430075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 10917507 - 10917575
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||| ||||||    
T  10917507 gttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttaaggacagccctg 10917575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 23606616 - 23606548
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||| || |||||||||||||||    
T  23606616 gttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagggacggccctg 23606548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 23798247 - 23798179
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||| |||||||||||| ||| ||||||||||||||||| || |||||||||||||||    
T  23798247 gttttgattttatcattgacctcttttcgttcccagagccgagcctccgaattcttagggacggccctg 23798179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 2952206 - 2952135
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgca 108  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||| || | |||||||||||||||    
T  2952206 tgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctgca 2952135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 41879296 - 41879370
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgcaaata 112  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||| ||| || | |||||||||||||||||||    
T  41879296 gttttaattttatcactaacctcttttcattcccagagccgagccttcgaattctcagggacggccctgcaaata 41879370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 3048504 - 3048434
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||| || | || |||||||||||    
T  3048504 tgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagagacggccctgc 3048434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 45475933 - 45476002
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||||||| || | ||||| ||||||||    
T  45475933 gttttgattttatcactggcctcttttcattccccgagccgagcctccgaattctcagggatggccctgc 45476002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 20003796 - 20003728
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||||| | || | |||||||||||||    
T  20003796 gttttgattttatcactggcctcttttcattccccgagccgagcctccaaattctcagggacggccctg 20003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 30883446 - 30883512
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||| || || | ||||||||||    
T  30883446 tgttttgattttatcactggcctcttttcatttccagagccgagcctctgaattctcagggacggcc 30883512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 5860729 - 5860681
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctcc 85  Q
    |||||||||||||||| |||||||||||||||  |||||||||||||||    
T  5860729 tgttttgattttatcattgacctcttttcatttccagagccgagcctcc 5860681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 20091265 - 20091197
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||    
T  20091265 gttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccctg 20091197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 23551057 - 23550988
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |||||    
T  23551057 tgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacgaccctg 23550988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 48983824 - 48983755
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  48983824 gttttgattttatcattggcctcttttcattctcagagccgagcctccgaattcttagggacggccctgc 48983755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 29077336 - 29077404
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||    
T  29077336 gttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 29077404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 10329395 - 10329327
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || ||||| |||||||||    
T  10329395 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttaggaacggccctg 10329327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 12596275 - 12596207
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || | |||||||||||||    
T  12596275 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 12596207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 25010543 - 25010611
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||| || |||||||||||||||    
T  25010543 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattcttagggacggccctg 25010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 8171523 - 8171460
Alignment:
Q  40 tttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||||    
T  8171523 tttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggcc 8171460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 18776750 - 18776683
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| || | |||||||||||||    
T  18776750 ttttgattttatcactgacctcttttcatttccagagccgagcctccgaattctcagggacggccctg 18776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 26254109 - 26254179
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||| || | |||||| |||||||    
T  26254109 tgttttgattttatcactgacctcttttcattcccaaagccgagcctccgaattctcagggacagccctgc 26254179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 28749826 - 28749896
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||| ||  |||||||||||| ||||||||||||||||| |||| ||||||||||||||    
T  28749826 tgttttgattttatcattggtctcttttcattcccagagccgagcctccgaattttcagggacggccctgc 28749896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 24525667 - 24525598
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||| || ||||||||| ||||||    
T  24525667 gttttgattttatcacaggcctcttttcattcccagagccgagcctccgaattcttagggacgaccctgc 24525598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 47984953 - 47984884
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||  ||| || ||||||||||||||||    
T  47984953 gttttgattttatcactggcatcttttcattcccagagccgagccaacgaattcttagggacggccctgc 47984884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 40357365 - 40357316
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  40357365 gttttgattttatcactgaccttttttcatttccagagccgagcctccga 40357316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 8239803 - 8239869
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccc 104  Q
    ||||| ||||||||| || ||||||||||||  ||||||||||||||| | || |||||||||||||    
T  8239803 gttttcattttatcattggcctcttttcatttccagagccgagcctccaaattcttagggacggccc 8239869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 19692211 - 19692279
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||  | |||||||||  ||||||||||| ||||| || ||||||| |||||||    
T  19692211 gttttgattttatcactggacacttttcatttccagagccgagcttccgaattcttagggagggccctg 19692279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 38414861 - 38414792
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||| |||   |||||||||||  ||||| ||||||||||| || ||||||||| ||||||    
T  38414861 gttttgattttatgactagtctcttttcatttccagagtcgagcctccgaattcttagggacgaccctgc 38414792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 27506727 - 27506659
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||    
T  27506727 gttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccctg 27506659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 4506009 - 4506078
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||| || | |||||||||||||    
T  4506009 tgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 4506078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 8907065 - 8906996
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||| || | ||| |||||||||    
T  8907065 tgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctcaggaacggccctg 8906996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 24410555 - 24410623
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| || | |||||||||||| || |||||||||||||||    
T  24410555 gttttgattttatcactggcctcttttcattcccaaaaccgagcctccgaattcttagggacggccctg 24410623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 26716245 - 26716313
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||||||||| || |||||||||  ||| || |||||||||||||||    
T  26716245 gttttgattttatcactgacctcttttcattcccaaagccgagccaacgaattcttagggacggccctg 26716313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 40636252 - 40636322
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||| ||||||||||||| |||||| |||||||||| || | ||||||||| ||||    
T  40636252 tgttttgattttatcactggcctcttttcattcccagagctgagcctccgaattctcagggacggctctgc 40636322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 3155332 - 3155401
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||| ||||||||||||||||||||||||| | | |||||||||||||| || | |||||||||||||    
T  3155332 tgttttaattttatcactgacctcttttcatttttaaagccgagcctccgaattctcagggacggccctg 3155401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 6965122 - 6965186
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||||| || | ||||||||||    
T  6965122 ttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggcc 6965186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 8327733 - 8327801
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||    
T  8327733 gttttgattttatcactgatctcttttcatttccagaactgagcctccgaatttttagggacggtcctg 8327801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 29939849 - 29939781
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||| ||| || | |||||||| ||||    
T  29939849 gttttgattttatcactgacctctttttattcccagagccgagccttcgaattctcagggacggtcctg 29939781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 12337432 - 12337365
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||| ||| || | |||||||||||||    
T  12337432 ttttgattttatcactggcctcttttcatttccagagccgagccttcgaattctcagggacggccctg 12337365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 10762553 - 10762483
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgca 108  Q
    ||||| |||||||||||| ||||||||||||| |||||| |||||||| | || |||||||||||| ||||    
T  10762553 gttttaattttatcactggcctcttttcattcccagagctgagcctccaaattcttagggacggccatgca 10762483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 3953121 - 3953189
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||||||||||||||  || |||||||||||| | || | ||||||| ||||||    
T  3953121 ttttgattttatcactgacctcttttcatttccaaagccgagcctccaaattctcagggacgaccctgc 3953189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 1396686 - 1396636
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    ||||||||||||||||||| ||||||||||||  ||||| |||||||||||    
T  1396686 tgttttgattttatcactggcctcttttcatttccagagtcgagcctccga 1396636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 9046145 - 9046213
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| |||||||| |||| |||||| |||||  ||| || || ||||||||||||    
T  9046145 gttttgattttatcactggcctcttttaattcccagagctgagccaacgaattctttgggacggccctg 9046213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 5952704 - 5952642
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacg 100  Q
    ||||||||||||||| || |||||||||||||  |||||||| ||||||| || | |||||||    
T  5952704 gttttgattttatcattggcctcttttcattccgagagccgaacctccgaattctcagggacg 5952642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 34694090 - 34694155
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    |||||||||||||||| | ||||||||||||  |||| |||| ||||||| || | ||||||||||    
T  34694090 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacggcc 34694155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 34716502 - 34716567
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    |||||||||||||||| | ||||||||||||  |||| |||| ||||||| || | ||||||||||    
T  34716502 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacggcc 34716567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 50939220 - 50939150
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgca 108  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  50939220 gttttgattttatcactggcctcttttcattctcagagccgagcccccgaattcttagggacggccctgca 50939150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 47467804 - 47467872
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||    
T  47467804 gttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 47467872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 54407141 - 54407072
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||| | ||||||||||||| ||||||||||||||||| || ||||||||||||||||    
T  54407141 gttttgattttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccctgc 54407072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 8073325 - 8073257
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||| || | |||||||||||||    
T  8073325 gttttgattttatcactgacctcttttcatttccagagccgagcctccgaattctcagggacggccctg 8073257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 34290622 - 34290554
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||| |||||||||||    
T  34290622 gttttgattttatcactgacttcttttcattcccagagccgagcctccgaattcttaaggacggccctg 34290554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 37168487 - 37168551
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggc 102  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||    
T  37168487 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggc 37168551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 48720497 - 48720429
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||| | || |||||||||||||||    
T  48720497 gttttgattttatcacttacctcttttcattcccagagccgagcctcccaattcttagggacggccctg 48720429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 27078555 - 27078485
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||| || | ||||||||||||||    
T  27078555 tgttttgattttatcactgacctcttttcatttccagagccaagcctccgaattctcagggacggccctgc 27078485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 27084352 - 27084282
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    ||||||||||||||||||||||||||||||||  ||||||| ||||||||| || | ||||||||||||||    
T  27084352 tgttttgattttatcactgacctcttttcatttccagagccaagcctccgaattctcagggacggccctgc 27084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 29620426 - 29620364
Alignment:
Q  44 attttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||    
T  29620426 attttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 29620364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 36606084 - 36606149
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggcc 103  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||||||| |||| ||||||||||    
T  36606084 gttttgattttatcactgacctcttttcatttccagagccgaacctccgaattttcagggacggcc 36606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 38681080 - 38681011
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||| || | |||||||||||||    
T  38681080 tgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 38681011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 21582892 - 21582960
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| || |||||||||||||| || | |||||||||||||    
T  21582892 gttttgattttatcactggcctcttttcattcccaaagccgagcctccgaattctcagggacggccctg 21582960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 50258611 - 50258541
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||||| |||||||| ||| ||||||||||||||||| || | ||| ||||||||||    
T  50258611 tgttttgattttatcactgatctcttttcgttcccagagccgagcctccgaattctcaggaacggccctgc 50258541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 36716011 - 36715942
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||| |||||||||||| ||||||||||||  ||||||||||||||||| || | |||||||||||||    
T  36716011 tgtttttattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 36715942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 43207217 - 43207157
Alignment:
Q  46 tttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||| ||||||||||||| ||||||||||||||| | || |||||||||||||||    
T  43207217 tttatcactggcctcttttcattcccagagccgagcctccaaattcttagggacggccctg 43207157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 44708596 - 44708660
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggc 102  Q
    |||||||||||||||||| ||||||||||||| |||||  |||||||||| || |||||||||||    
T  44708596 gttttgattttatcactggcctcttttcattcccagagttgagcctccgaattcttagggacggc 44708660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 18372602 - 18372651
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  18372602 gttttgattttatcactgacctcttttcattcccagtgtcgagcctccga 18372651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 53506870 - 53506802
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||||| ||| || ||| |||||||||||    
T  53506870 tgttttgattttatcactggcctctcttcattcccagagccgagccttcgaattctta-ggacggccctg 53506802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 54619190 - 54619121
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||| || | ||||||||||  ||||||||||||||||| || | |||||||||||||    
T  54619190 tgttttgattttatcattggcttcttttcatttccagagccgagcctccgaattctcagggacggccctg 54619121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 48157247 - 48157310
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacg 100  Q
    ||||||||||||||||||| |||||||| |||| | || |||||||||||| || |||||||||    
T  48157247 tgttttgattttatcactggcctctttttattcccggaaccgagcctccgaattcttagggacg 48157310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 42098922 - 42098989
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||| ||||||||||||  | |||| |||||| ||| || | |||||||||||||    
T  42098922 ttttgattttatcactggcctcttttcatttcccgagctgagccttcgaattctcagggacggccctg 42098989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 3953882 - 3953816
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccct 105  Q
    |||| |||||||||||| ||||||||||||  |||||| || ||||||| || | ||||||||||||    
T  3953882 ttttaattttatcactggcctcttttcatttccagagcggaacctccgaattctcagggacggccct 3953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 9878674 - 9878642
Alignment:
Q  38 gttttgattttatcactgacctcttttcattct 70  Q
    |||| ||||||||||||||||||||||||||||    
T  9878674 gtttagattttatcactgacctcttttcattct 9878642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 1459 - 1528
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| || | ||||||||||||||    
T  1459 gttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctgc 1528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 27788676 - 27788608
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  27788676 gttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 27788608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 27314165 - 27314096
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||| ||||||||||||||    
T  27314165 gttttgattttatcactggcctcttttcattcccagagtcgagcctccgaattttcagggacggccctgc 27314096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 17354074 - 17354142
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||| || |||||||||||||||    
T  17354074 gttttgattttatcactgacctcttttcattccaagagtcgagcctccgaattcttagggacggccctg 17354142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 1155832 - 1155767
Alignment:
Q  39 ttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccc 104  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||| | ||||||||||||||||    
T  1155832 ttttgattttatcactgacctcttttcattcctagaaccgagcctccaaatttttagggacggccc 1155767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 13727386 - 13727317
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||| || | |||||||||||||    
T  13727386 tgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 13727317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 21280664 - 21280733
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||||| || | |||||||||||||    
T  21280664 tgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 21280733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 30832511 - 30832442
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgc 107  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| ||| || | ||||||||||||||    
T  30832511 gttttgattttatcactggcctcttttcattcccagagccgagccttcgaattctcagggacggccctgc 30832442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 20711706 - 20711638
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||| |||||||||||||||||| |||| |||||||||||| || | ||||||| |||||    
T  20711706 gttttgattttatgactgacctcttttcattcccagaaccgagcctccgaattctcagggacgtccctg 20711638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 24710982 - 24710914
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||||||||||||||| |||||||||||||| | |||| |||||||||| || | |||||||||||||    
T  24710982 gttttgattttatcactaacctcttttcattccctgagctgagcctccgaattctcagggacggccctg 24710914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 21479614 - 21479685
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctgca 108  Q
    ||||||||||||||||||| ||||||||||||  ||||||||||||||| | || | || ||||||||||||    
T  21479614 tgttttgattttatcactggcctcttttcatttccagagccgagcctccaaattctcagagacggccctgca 21479685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 33774237 - 33774287
Alignment:
Q  37 tgttttgattttatcactgacctcttttcattctcagagccgagcctccga 87  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||||||||    
T  33774237 tgttttgattttattactggcctcttttcattttcagagccgagcctccga 33774287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 19987277 - 19987330
Alignment:
Q  47 ttatcactgacctcttttcattctcagagccgagcctccgattttttagggacg 100  Q
    |||||||||||||||||||||||| |||||||| ||||||| || |||||||||    
T  19987277 ttatcactgacctcttttcattctgagagccgatcctccgaattcttagggacg 19987330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 98
Target Start/End: Complemental strand, 235211 - 235151
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttaggga 98  Q
    ||||||||||||||||||  ||||||||||||||| |||||| ||||||| || |||||||    
T  235211 gttttgattttatcactggtctcttttcattctcatagccgaacctccgaattcttaggga 235151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 28075906 - 28075953
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctcc 85  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||||||    
T  28075906 gttttgattttttcactggcctcttttcattcccagagccgagcctcc 28075953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 106655 - 106723
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||| | || |||||||||||||||    
T  106655 gttttgattttatcactggcctcttttcattcccagagccgagcctccaaattcttagggacggccctg 106723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 183176 - 183244
Alignment:
Q  38 gttttgattttatcactgacctcttttcattctcagagccgagcctccgattttttagggacggccctg 106  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||| || |||| |||||||||||||    
T  183176 gttttaattttatcactggcctcttttcattcccagagccgagcctctgaattttcagggacggccctg 183244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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