View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2308_high_1 (Length: 245)
Name: NF2308_high_1
Description: NF2308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2308_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 7881415 - 7881355
Alignment:
| Q |
168 |
ttaaaacaactcaacacaaatattgactaatgttgattcaagagaggtttatggcacaaac |
228 |
Q |
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| T |
7881415 |
ttaaaacaactcaacacaaatattgactaatgttgactcaagagaggtttatggcacaaac |
7881355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 7881848 - 7881790
Alignment:
| Q |
22 |
gtgatattattttactttagcatataaaatacttgaagaaaacaagcttcattattatatt |
82 |
Q |
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| T |
7881848 |
gtgatattatttta--tcagaatgtaaagtacttgaagaaaataagcttcattattatatt |
7881790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 18928392 - 18928446
Alignment:
| Q |
105 |
aaaataatacatatgatcaaaataacaaagtgcaaagctttcttataaaccatat |
159 |
Q |
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| T |
18928392 |
aaaataatacatgtgatcaaaataaaaaaatgtaaagttttcttataaaccatat |
18928446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 7018117 - 7018063
Alignment:
| Q |
105 |
aaaataatacatatgatcaaaataacaaagtgcaaagctttcttataaaccatat |
159 |
Q |
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| T |
7018117 |
aaaataatacatgtgatcaaaataaataaatgtaaagttttcttataaaccatat |
7018063 |
T |
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