View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2309_low_1 (Length: 425)
Name: NF2309_low_1
Description: NF2309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2309_low_1 |
 | |
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| [»] scaffold0755 (1 HSPs) |
| | |
|
| [»] scaffold0352 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 32439702 - 32440116
Alignment:
| Q |
7 |
ggagcagagatgtgtatgggacaaacagttgagaaaaaagttgcttaaggatctctaccataacaaagcttgccaacggctgcaaatcaaacaaaaatgg |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
32439702 |
ggagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatgg |
32439801 |
T |
|
| Q |
107 |
tgttgaatatctaacctaaagcagaaattacaaaaataagtaattaattgctcttaaaattttctgaaactcatataataattgaatgatatcgttgaag |
206 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
32439802 |
tgttgaatatctaagctaaatcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaag |
32439901 |
T |
|
| Q |
207 |
tgcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatctgatattcaaagaacaaagttannnnnnngacagagata |
306 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
32439902 |
tgcgaagatattcaattgaatctacatagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttattttttt-acagagata |
32440000 |
T |
|
| Q |
307 |
aacataaaaatcaattttcct--------------gtaaatcgattttcatatatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaa |
392 |
Q |
| |
|
|||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32440001 |
aacataaaaatcaactttcataggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaa |
32440100 |
T |
|
| Q |
393 |
attaaccgtttacaat |
408 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
32440101 |
attaaccgtttacaat |
32440116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 11395017 - 11394604
Alignment:
| Q |
8 |
gagcagagatgtgtatgggacaaacagttgagaaaaaagttgcttaaggatctctaccataacaaagcttgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
11395017 |
gagcaaagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaagcctgccaacggctgcaaatcaaacaaaaatggt |
11394918 |
T |
|
| Q |
108 |
gttgaatatctaacctaaagcagaaattacaaaaataagtaattaattgctcttaaaattttctgaaactcatataataattgaatgatatcgttgaagt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
11394917 |
gttgaatatctaagctaaagcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
11394818 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatctgatattcaaagaacaaagttannnnnnngacagagataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
11394817 |
gcgaagatattcaattgaatctacgtagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttattttttt-acagagataa |
11394719 |
T |
|
| Q |
308 |
acataaaaatcaattttc--------------ctgtaaatcgattttcatatatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
393 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11394718 |
acataaaaatcaactttcagaggaaaattgaagggtaaatcgattttgatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
11394619 |
T |
|
| Q |
394 |
ttaaccgtttacaat |
408 |
Q |
| |
|
||||||||||||||| |
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|
| T |
11394618 |
ttaaccgtttacaat |
11394604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 289
Target Start/End: Original strand, 46233096 - 46233377
Alignment:
| Q |
8 |
gagcagagatgtgtatgggacaaacagttgagaaaaaagttgcttaaggatctctaccataacaaagcttgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||| |
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|
| T |
46233096 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctccaccataacaaaacctgccaacggctgcaaatcaaacaaaaatggc |
46233195 |
T |
|
| Q |
108 |
gttgaatatctaacctaaagcagaaattacaaaaataagtaattaattgctcttaaaattttctgaaactcatataataattgaatgatatcgttgaagt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
46233196 |
gttgaatatctaagctaaagcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
46233295 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatctgatattcaaagaacaaagtta |
289 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46233296 |
gcgaagatattcaattgaatctacctagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagtta |
46233377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 46233404 - 46233484
Alignment:
| Q |
328 |
gtaaatcgattttcatatatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaattaaccgtttacaat |
408 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233404 |
gtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaattaaccgtttacaat |
46233484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 408
Target Start/End: Complemental strand, 9209514 - 9209101
Alignment:
| Q |
8 |
gagcagagatgtgtatgggacaaacagttgagaaaaaagttgcttaaggatctctaccataacaaagcttgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
9209514 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacctctaccataacaaaacctgccaacggctgcaaatcaaacaaaaatggt |
9209415 |
T |
|
| Q |
108 |
gttgaatatctaacctaaagcagaaattacaaaaataagtaattaattgctcttaaaattttctgaaactcatataataattgaatgatatcgttgaagt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
9209414 |
gttgaatatctaagctaaagcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
9209315 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatctgatattcaaagaacaaagttannnnnnngacagagataa |
307 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
9209314 |
gcgaagatattcaattgaatctacctagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttattttttt-acatagataa |
9209216 |
T |
|
| Q |
308 |
acataaaaatcaattttc--------------ctgtaaatcgattttcatatatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
393 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9209215 |
acataaaaatcaactttcagaggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
9209116 |
T |
|
| Q |
394 |
ttaaccgtttacaat |
408 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
9209115 |
ttaaccgtttacaat |
9209101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 16261783 - 16262196
Alignment:
| Q |
8 |
gagcagagatgtgtatgggacaaacagttgagaaaaaagttgcttaaggatctctaccataacaaagcttgccaacggctgcaaatcaaacaaaaatggt |
107 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
|
|
| T |
16261783 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaaggacatctaccataacaaagcctgccaacggttgcaaataaaaaaaaaatggt |
16261882 |
T |
|
| Q |
108 |
gttgaatatctaacctaaagcagaaattacaaaaataagtaattaattgctcttaaaattttctgaaactcatataataattgaatgatatcgttgaagt |
207 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
16261883 |
gttgaatatctaagctaaatcagaaattacaaaaataagtaattaattgctcctaaaattttctgaaactcatataataatagaaggatatcgttgaagt |
16261982 |
T |
|
| Q |
208 |
gcgaagatattcaattgaatctacgtagnnnnnnnatatacaaatttgtaattgagtatctgatattcaaagaacaaagttannnnnnngacagagataa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
16261983 |
gcgaagatattcaattgaatctacgtagttttttgatatacaaatttgtaattgagtatttgatattcaaagaacaaagttattttttt-acagagataa |
16262081 |
T |
|
| Q |
308 |
acataaaaatcaattttcct--------------gtaaatcgattttcatatatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
393 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16262082 |
acataaaaatcaactttcataggaaaattgaagggtaaatcgattttcatttatggaggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaa |
16262181 |
T |
|
| Q |
394 |
ttaaccgtttacaat |
408 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16262182 |
ttaaccgtttacaat |
16262196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 2969 - 2920
Alignment:
| Q |
8 |
gagcagagatgtgtatgggacaaacagttgagaaaaaagttgcttaagga |
57 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2969 |
gagcagagatgagtatgggacaaacagttgagaaaaaagttgcttaagga |
2920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 16333 - 16378
Alignment:
| Q |
350 |
aggcgtgagaatagagtgacgaagatgaaagtgtgagcaagaaatt |
395 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
16333 |
aggcgtgagaatagagtgaaaaagatgaaagggtgagcaaaaaatt |
16378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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