View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2309_low_2 (Length: 304)
Name: NF2309_low_2
Description: NF2309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2309_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 51740636 - 51740358
Alignment:
| Q |
18 |
attgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51740636 |
attgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattt |
51740537 |
T |
|
| Q |
118 |
tctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagcacaatgttgcaatcttctgcatttaaatc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51740536 |
tctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagcacaacgttgcaatcttctgcatttaaatc |
51740437 |
T |
|
| Q |
218 |
ctgtatatacaataataaccaaattaagagttatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51740436 |
ctgtatatacaataataaccaaattaagagtaatcatttaataatacaaatgaaactgcatgaattacctacctttgct |
51740358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 10201425 - 10201260
Alignment:
| Q |
24 |
gatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtggttcaatagctgtatggttatttgagaacattttctctt |
123 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||| || |||||||| |||||||||||||| | ||||||||| ||||| ||||||||||||| |
|
|
| T |
10201425 |
gatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtggttcaattgttgtatggttgtttgaaaacattttctctt |
10201326 |
T |
|
| Q |
124 |
cccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctactagca |
189 |
Q |
| |
|
|||| |||||| ||| |||||||| |||||||||||||||||||| | |||||| | |||||||| |
|
|
| T |
10201325 |
ccccctttgctataaacgacacaattattcctgatattattgtgtttaatactatcgatactagca |
10201260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University