View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2309_low_5 (Length: 262)
Name: NF2309_low_5
Description: NF2309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2309_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 28649061 - 28649297
Alignment:
| Q |
6 |
agataattctaagtagatggtggctctagctataaggaaccgaaaaaattaatggaaataagggtattaacaaccaaagaatataatgttatcattgatt |
105 |
Q |
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| T |
28649061 |
agataattctaagtaggtggtggctctagctataagcaaccgaaaaaattaatggaaataaggatattaacaaccaaagaatat--tgttatcattgatt |
28649158 |
T |
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| Q |
106 |
agaagggctaatgcatgcttaatgttaaaagtaagagtataccaccaaatttgtttaggattttccacactttttcttatttgatatttcaagcaaacaa |
205 |
Q |
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| T |
28649159 |
agaatggttaatgcttgcttaatgttaaaagtaagagtataccaccaaatttgtctaggattttccacactttttcttatttggtctttcaagcaaacaa |
28649258 |
T |
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| Q |
206 |
aaataacatatagtttatgcctgttgagtatggctcata |
244 |
Q |
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| T |
28649259 |
aaataacatatagtttatgcttgttgagtatggctcata |
28649297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 28639794 - 28639989
Alignment:
| Q |
42 |
gaaccgaaaaaattaatggaaataa--gggtattaacaaccaaagaatataatgttatcattgattagaagggctaatgcatgcttaatgttaaaagtaa |
139 |
Q |
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| T |
28639794 |
gaaccgaaaaaattaattgaaatatatggatattaacaaccaaagcatataatgccatcattgattagaaggggtaatgc----ttaatgtttaaagtaa |
28639889 |
T |
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| Q |
140 |
gagtataccaccaaatttgtttaggattttccacactttttcttatttgatatttcaagc-aaacaaaaataacatatagtttatgcctgttgagtatgg |
238 |
Q |
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| T |
28639890 |
gagtacaccaccaattttgtctaggattttacacactttttcttaattggtctttcaagcaaaaaaaaaataacatatggtctatgactattgagtatgg |
28639989 |
T |
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