View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_high_1 (Length: 528)
Name: NF2310_high_1
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 345 - 511
Target Start/End: Complemental strand, 26041776 - 26041607
Alignment:
| Q |
345 |
gaagcacctccatccgaaccaacaaca---caatccaattcctaaaaccatacctaacctcccaacaaaaaccaatcctctacggttggctctgtagcgc |
441 |
Q |
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| T |
26041776 |
gaagcacctccctccgaaccaacaacaacacaatccaattcctaaaaccatacctaacctcccaacaaaaaccaatcctctacggttggctctgtagcgc |
26041677 |
T |
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| Q |
442 |
aatctccgtctactccctttccaaccttctctccaaattctctgccgtcaccaccgccacaacaaccgtc |
511 |
Q |
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| T |
26041676 |
aatctccgtctactccctttccaaccttctctccaaattctccgccgtcaccaccgccacaacaaccgtc |
26041607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 26042173 - 26041995
Alignment:
| Q |
9 |
ttcgaacgcgggataataaaaaataaacgagcatggtgcattaaaaatattgatgaagagaaa-----------------tgttaatgaaacaattcata |
91 |
Q |
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||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
26042173 |
ttcgaacgccggacaacaaaaaataaacgagcatggtgcattaaaaatattgatgaagagaaacgtatttaaaagagaaatgttaatgagacaattcata |
26042074 |
T |
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| Q |
92 |
tgaatcgcagagaaattggtccaacactaatgaatataataatcctcccaaattaatccacatgcttgcttcttatagtg |
171 |
Q |
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| T |
26042073 |
tgaatcgaacagaaattggtccaacactaatgaatat-ataatcctcccaaattaatccacatgcttgcttcttatagtg |
26041995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 26041941 - 26041860
Alignment:
| Q |
192 |
atatttgaaacaccattctcatttccatttcctcaagaaacataatgccaatctcatattcactctcatcgtcattcattct |
273 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26041941 |
atatttcaaacaccattctcattcccatttcctcaagaaacataatgccaatctcatattcactctcatcatcattcattct |
26041860 |
T |
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