View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_high_3 (Length: 451)
Name: NF2310_high_3
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 433
Target Start/End: Complemental strand, 833891 - 833466
Alignment:
| Q |
8 |
ccaagaatataacaatcttcgtgacaaaatttgtttaaaaaaccaccccaacaccatccattctctttatatatatagtaagatatggaaacaatgtata |
107 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
833891 |
ccaacaatataacaatcttcgtgacgaaatttgtttaaaaaaccaccccaacaccatccattctctttatatatatagtaagatatggaaacaatgtata |
833792 |
T |
|
| Q |
108 |
ccaaaccaattcaaccgaactcgtgaactccaaaaatcagcttatttcattcatagtatttttaccacaaagacttgatcaataaccatttcatggatcg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
833791 |
ccaaaccaattcaaccgaactcgtgaactccaaaaatcagcttatttcattcatagtatttttaccataaagacttgatcaataaccatttcatggatcg |
833692 |
T |
|
| Q |
208 |
gtcctacatcagcctgcatgtgagtcatgttcatgaaccaattttacttgactcaaaagacattccttctttggggggttggttcttaattaactttgat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
833691 |
gtcctacatcagcctgcatgtgagtcatgttcatgaaccaatcttacttgactcaaaagacattccttctttggggggttggttcttaattaactttgat |
833592 |
T |
|
| Q |
308 |
ttcacccacataattttaccctcggatcacgatgctacaacctctatgtccaactctacaattacaatgaacaaaatcttggcgatccctattgaaatct |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
833591 |
ttcacccacataattttaccctcggatcacgatgctacaacctctatgtccaactctgcgattacaatgaacaaaatcttggcgatccctattgaaatct |
833492 |
T |
|
| Q |
408 |
tatgtaattgtacggagggagatcat |
433 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
833491 |
tatgtaattgtacggagggagatcat |
833466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 417
Target Start/End: Complemental strand, 16530756 - 16530538
Alignment:
| Q |
199 |
catggatcggtcctacatcagcctgcatgtgagtcatgttcatgaaccaattttacttgactcaaaagacattccttctttggggggttggttcttaatt |
298 |
Q |
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|||||||||||||| | ||||||| |||||||| ||| |||| | |||| ||| | | || |||||||| ||| |||| |||||| ||||| ||| |
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| T |
16530756 |
catggatcggtccttcttcagcctaagtgtgagtcctgtccatggagcaatcttatataatccacaagacattacttttttgacgggttgcttcttgatt |
16530657 |
T |
|
| Q |
299 |
aactttgatttcacccacataattttaccctcggatcacgatgctacaacctctatgtccaactctacaattacaatgaacaaaatcttggcgatcccta |
398 |
Q |
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| ||| ||||||| ||| |||||||||| | || || ||||| |||| | | ||||||||| ||| |||| ||| |||||| |||||||||| |||| |
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| T |
16530656 |
gattttaatttcactcacgtaattttacctccagaacatgatgcgacaaacaatttgtccaactttacgattagaatcaacaaagtcttggcgattccta |
16530557 |
T |
|
| Q |
399 |
ttgaaatcttatgtaattg |
417 |
Q |
| |
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||||||||||||||||||| |
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| T |
16530556 |
ttgaaatcttatgtaattg |
16530538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 417
Target Start/End: Complemental strand, 16540404 - 16540186
Alignment:
| Q |
199 |
catggatcggtcctacatcagcctgcatgtgagtcatgttcatgaaccaattttacttgactcaaaagacattccttctttggggggttggttcttaatt |
298 |
Q |
| |
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|||||||||||||| | ||||||| |||||||| ||| |||| | |||| ||| | | || |||||||| ||| |||| |||||| ||||| ||| |
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|
| T |
16540404 |
catggatcggtccttcttcagcctaagtgtgagtcctgtccatggagcaatcttatataatccacaagacattacttttttgacgggttgcttcttgatt |
16540305 |
T |
|
| Q |
299 |
aactttgatttcacccacataattttaccctcggatcacgatgctacaacctctatgtccaactctacaattacaatgaacaaaatcttggcgatcccta |
398 |
Q |
| |
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| ||| ||||||| ||| |||||||||| | || || ||||| |||| | | ||||||||| ||| |||| ||| |||||| |||||||||| |||| |
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| T |
16540304 |
gattttaatttcactcacgtaattttacctccagaacatgatgcgacaaacaatttgtccaactttacgattagaatcaacaaagtcttggcgattccta |
16540205 |
T |
|
| Q |
399 |
ttgaaatcttatgtaattg |
417 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
16540204 |
ttgaaatcttatgtaattg |
16540186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 21190444 - 21190484
Alignment:
| Q |
44 |
aaaaaaccaccccaacaccatccattctctttatatatata |
84 |
Q |
| |
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||||||| ||||||| |||||| |||||||||||||||||| |
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|
| T |
21190444 |
aaaaaactaccccaaaaccatctattctctttatatatata |
21190484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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