View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_high_4 (Length: 399)
Name: NF2310_high_4
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 10338157 - 10337777
Alignment:
| Q |
19 |
gtagaatccaaaccagaagtaggttcatcaagcaacaaaaggcttggatttataagcatttcttgtcctatactcactctccttttctcaccacctgata |
118 |
Q |
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| T |
10338157 |
gtagaatccaaaccagaagtaggttcatcaagcaacaaaaggcttggatttataagcatttcttgtcctatactcactctccttttctcaccacctgata |
10338058 |
T |
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| Q |
119 |
tacctctcaaaagtggtcctccaatcatactattcctacaattatttagtcctaactcagaaatcactctctctacatgcacaactttttcatctcttgt |
218 |
Q |
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| T |
10338057 |
tacctctcaaaagtggtcctccaatcatactattcctacaattatttagtcctaactcagaaatcactctctctacatgcacaactttttcatctcttgt |
10337958 |
T |
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| Q |
219 |
taaggttttaggaagcctcaaaagtgcagtgaacactagtgtttcggtaacggttaagtgagggtaaagaacatcatcttgagctacaaaacctgttctt |
318 |
Q |
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| T |
10337957 |
taaggttttaggaagcctcaaaagtgcagtgaacactagtgtttcggtaacggttaagtgagggtaaagaacatcatcttgagctacaaaacctgttctt |
10337858 |
T |
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| Q |
319 |
ctttttattgaacccgagaaaggttgattgttgtaagtggtttttccggttagtttgccgttgagacggcctccgagtgct |
399 |
Q |
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| T |
10337857 |
ctttttattgaacccgagaaaggttgattgttgtaagtggtttttccggttagtttgccgttgagacggcctccgagtgct |
10337777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 33718675 - 33718601
Alignment:
| Q |
18 |
agtagaatccaaaccagaagtaggttcatcaagcaacaaaaggcttggatttataagcatttcttgtcctatact |
92 |
Q |
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| T |
33718675 |
agtagaatccaaaccagaagttggttcatcaagaaacaacaaactaggatttataagcaattcttgtccaatact |
33718601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 33718452 - 33718367
Alignment:
| Q |
241 |
agtgcagtgaacactagtgtttcggtaacggttaagtgagggtaaagaacatcatcttgagctacaaaacctgttcttctttttat |
326 |
Q |
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| T |
33718452 |
agtgctgtgaaaacaagcgtttcggttaccgttaagtgagggtaaagaacatcatcttgtgtgacaaaacctgtgtttctttttat |
33718367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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