View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_1 (Length: 553)
Name: NF2310_low_1
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_1 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 95 - 311
Target Start/End: Original strand, 7247255 - 7247471
Alignment:
| Q |
95 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgca |
194 |
Q |
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| T |
7247255 |
ctgcacctgcctttgttgttgctgctgctgcccttgtctctgacatcttttacacaaattcataaactaatgtacaaagaaaaaattaaatgcaaatgca |
7247354 |
T |
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| Q |
195 |
tgttagtccatgcacctttggttttgctgtctccacatcattctttgaaaacagtgccatcagattatgtcaagtgtaagctgcttggctacctatactg |
294 |
Q |
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| T |
7247355 |
tgttagtccatgcacctttggttttgctgtctccacatcattctttgaaaacagtgccatcagattatgtcaagtgtaagctgcttagctacctatactg |
7247454 |
T |
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| Q |
295 |
cctattttatcatatat |
311 |
Q |
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| T |
7247455 |
cctattttatcatatat |
7247471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 357 - 536
Target Start/End: Original strand, 7247524 - 7247703
Alignment:
| Q |
357 |
agattaagaatatgaatttgattcctgaagttcaacatttgagagacagttcaacctcagataaacaataaggacgtcttattatcgacttatgaattgg |
456 |
Q |
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||||||||||||| |||||||||||||||||| || |||||||||||| | ||||||| ||||||||||||||| || ||||||| ||||||||||||| |
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| T |
7247524 |
agattaagaatataaatttgattcctgaagtttaatatttgagagacattccaacctcgcataaacaataaggacatcctattatcaacttatgaattgg |
7247623 |
T |
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| Q |
457 |
ttatatagcgcgaccaaaagatctaaacctaaagtaagatattttggagtgtttattagaggtcaaaaaatccttaatct |
536 |
Q |
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| T |
7247624 |
ttatatagcacgatcaaaagatctaaacctaaagtaagatattttggagtgtttattagaggtcaaaaagtccttaatct |
7247703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 25321474 - 25321379
Alignment:
| Q |
120 |
tgctgcccttgtctctgacatcttttacagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
215 |
Q |
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||||||| |||||||| |||||||||||| ||||||| || |||||||||| ||||| | || |||||||||||||| |||||| ||||||||| |
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| T |
25321474 |
tgctgcctttgtctctaacatcttttacaaaaattcactaataaatgtacaaataaaaactaaatttcaaatgcatgttggtccattcacctttgg |
25321379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 18409 - 18505
Alignment:
| Q |
120 |
tgctgcccttgtctctgacatctttt-acagaaattcataaactaatgtacaaagaaaaaattaaattcaaatgcatgttagtccatgcacctttgg |
215 |
Q |
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||||||| ||||| |||||||||||| ||| ||||||| || |||||||||||||||| | || |||||||||||||| |||||| ||||||||| |
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| T |
18409 |
tgctgcctttgtcactgacatctttttacaaaaattcacaaggaaatgtacaaagaaaaactaaatttcaaatgcatgttggtccattcacctttgg |
18505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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