View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_10 (Length: 398)
Name: NF2310_low_10
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 41 - 380
Target Start/End: Original strand, 36849725 - 36850058
Alignment:
| Q |
41 |
actaaaacgtttgttagaaagccttttatatggtattagtatataagtttttgagaatagaattagctctgatcttcttgttgttttcaaaaagaacaca |
140 |
Q |
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| T |
36849725 |
actaaaacgtttgttagaaagacttttatatggtattagtatataagtttttgagaagagaattagctctgatcttcttgttgttttcaaaaagaacaca |
36849824 |
T |
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| Q |
141 |
aagtcttttgaagaatgcttggcttatatagaagtttgataatgatggggatatattagtgtgaaaatgacannnnnnnnnnnnnnnnnnnataataatg |
240 |
Q |
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| T |
36849825 |
aagtcttttgaagaatgcttggcttatatagaagtttgataatgatggggatatattagtgtgaaaatgaca------tatattattattaataataatg |
36849918 |
T |
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| Q |
241 |
aaatttcatgttcttttccaccgtcactttacccaacttctcctttttcaacatttcttctggccattattaaaattacatagaggagcaaatccttaat |
340 |
Q |
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| T |
36849919 |
aaatttcatgttcttttccaccgtcactttacccaacttctcctttttcaacatttcttctggccattattaaaattacatagaggagcaaatccttaat |
36850018 |
T |
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| Q |
341 |
tgaagattcaagtggtatttcaggtttggagaggtggatc |
380 |
Q |
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| T |
36850019 |
tgaagattcaagtggtatttcaggtttggagaggtggatc |
36850058 |
T |
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