View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_11 (Length: 396)
Name: NF2310_low_11
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 378
Target Start/End: Original strand, 44863464 - 44863829
Alignment:
| Q |
13 |
aatattagaaggggctgaatggaaaaatcaatgctgagataaagaaagcaaaggcgctgagctaagaaagtttcagaaacgtactaaaataccattgaag |
112 |
Q |
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| T |
44863464 |
aatattagaagggactgaatggaaaaatcaatgctgagataaagaaagcaaaggcgctgagctaagaaagtttcagaaatgtactaaaataccattgaag |
44863563 |
T |
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| Q |
113 |
atataaaccatttatttcatgattttttgtttctctgcttccttgtacctccacccttttcctagtaacatcttctaccaccagacaagaaagttctttc |
212 |
Q |
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| T |
44863564 |
atataaaccatttatttcatgattttttctttctttgcttccttgtacctccacccttttcctagtaacatcttctaccaccagacaagaaagttctttc |
44863663 |
T |
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| Q |
213 |
tgaattgatgcaaaaagttggaattaaggtggtgtagcgtatctctgaataattcagaaataatttgattatctatgaattgnnnnnnnnnnnnttggaa |
312 |
Q |
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| T |
44863664 |
tgaattgatgcaaaaagttggaattaaggttgtgtagcgtatctctgaataattcagaaataatttgattatctatgaattgaaaaaagaaaaactggaa |
44863763 |
T |
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| Q |
313 |
tgctctgatcacaatgattaggagnnnnnnnnacatagatctcatatcagtcatttttagatgtat |
378 |
Q |
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| T |
44863764 |
tgctctgatcacaatgattagtagttttttttacatagatctcatatcagtcatttttagatgtat |
44863829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 44881574 - 44881728
Alignment:
| Q |
226 |
aaagttggaattaaggtggtgtagcgtatctctgaataattcagaaataatttgattatctatgaattgnnnnnnnnnnnnttg--gaatgctctgatca |
323 |
Q |
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| T |
44881574 |
aaagttggaattaaggttgtgtagtgtatttctgaataattcagaaataatttgattatctatgaattaaaagaaaaaaaaatgtggaatgctctgatta |
44881673 |
T |
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| Q |
324 |
caatgattaggagnnnnnnnnacatagatctcatatcagtcatttttagatgtat |
378 |
Q |
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| T |
44881674 |
caatgattaggagttttatttacacagatctcatatcagtcatttttagatgtat |
44881728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 44880999 - 44881056
Alignment:
| Q |
51 |
ataaagaaagcaaaggcgctgagctaagaaagtttcagaaacgtactaaaataccatt |
108 |
Q |
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||||||||| ||||||| |||||||||||||||||||||| | |||||||||||| |
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| T |
44880999 |
ataaagaaaacaaaggcaatgagctaagaaagtttcagaaatgcgttaaaataccatt |
44881056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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