View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_12 (Length: 396)
Name: NF2310_low_12
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 44227277 - 44227429
Alignment:
| Q |
16 |
caagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttgtaatc |
115 |
Q |
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| T |
44227277 |
caagtaataagctttagtttagtttcttgctcaataagctacagcagaaccatagtatgttatggtgttcttgcaattagctatatatagctttgtaatt |
44227376 |
T |
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| Q |
116 |
agttgagcacttaagcaaaatcatttca-tttttcagtttcataatatggtat |
167 |
Q |
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| T |
44227377 |
acttgaactcttaaagaaaatcatttcattttttcagtttcataatatggtat |
44227429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 44231576 - 44231722
Alignment:
| Q |
16 |
caagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttgtaatc |
115 |
Q |
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||||||||| ||| ||| |||||||||||| ||||| ||||||||| | ||||||||||||||||| | |||||| ||||||| ||||||||||||| |
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| T |
44231576 |
caagtaataagctgtagcttagtttcttgctcaataagctacagcagaaccatagtatgttatggtattcttgcaatgagctatatatagctttgtaatt |
44231675 |
T |
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| Q |
116 |
agttgagcacttaagcaaaatcatttca-tttttcagtttcataata |
161 |
Q |
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| T |
44231676 |
acttgaactcttaaggaaaatcatttcattttttcagtttcataata |
44231722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 15885112 - 15885030
Alignment:
| Q |
30 |
tagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttgtaa |
113 |
Q |
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| T |
15885112 |
tagtttagttgtttgcacaataagctactgcagtaccatagtatgttatggtactcatg-atttagctatatatagccttgtaa |
15885030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 31356712 - 31356803
Alignment:
| Q |
16 |
caagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagct |
107 |
Q |
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| T |
31356712 |
caagtaataagctttagtttagtttcttgctcaataagctacagcagcaccatagtatgttatggtgttcttgcaattagctatatatagct |
31356803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 31368397 - 31368457
Alignment:
| Q |
101 |
aatagctttgtaatcagttgagcacttaagcaaaatcatttcatttttcagtttcataata |
161 |
Q |
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| T |
31368397 |
aatagctttgtaattacttgaactcttaaggaaaatcatttcatttttcagtttcataata |
31368457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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