View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_13 (Length: 376)
Name: NF2310_low_13
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 8e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 158 - 358
Target Start/End: Complemental strand, 21304236 - 21304027
Alignment:
| Q |
158 |
gattattgatcaaccaaacttaaatcttcatctacattgaagctctgatctcatcataggtcctataccgaatcatacttt-------atcctg--aata |
248 |
Q |
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| T |
21304236 |
gattattgatcaaccaaacttaaatcttcatctacattgaagttctgatttcttcataggtcctataccgaatcatactttcctgaatatcttagaaata |
21304137 |
T |
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| Q |
249 |
tctgactaaagaagcgcctaactcgatcggtcccttcaaactatgctcaccaaatatagagaacatggttttcatgtcgacaagtctggcctagtggtat |
348 |
Q |
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| T |
21304136 |
tctgactaaggaagcgcctaactcgatcggtcccttcaaactatgctcaccaaatatagagaacttggttttcatgtcgacaagtctggcctagtgatat |
21304037 |
T |
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| Q |
349 |
tggcttggga |
358 |
Q |
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|||||||||| |
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| T |
21304036 |
tggcttggga |
21304027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 32240655 - 32240576
Alignment:
| Q |
246 |
atatctgactaaagaagcgcctaactcgatcggtcccttcaaactatgctcaccaaatatagagaacatggttttcatgt |
325 |
Q |
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| T |
32240655 |
atatatgacaaaagaagcgtctaactcaatcggtccctttgaactatactgaacaaatatagagaatatggttctcatgt |
32240576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 40139629 - 40139700
Alignment:
| Q |
248 |
atctgactaaagaagcgcctaactcgatcggtcccttcaaactatgctcaccaaatatagagaacatggttt |
319 |
Q |
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| T |
40139629 |
atctcactaaagaaacatctaattcgatcggtcccttcaaactatactgaccaaatttagagaatatggttt |
40139700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 16972452 - 16972522
Alignment:
| Q |
248 |
atctgactaaagaagcgcctaactcgatcggtcccttcaaactatgctcaccaaatatagagaacatggtt |
318 |
Q |
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| T |
16972452 |
atctgaccagagaagcgtctaactcaaccgatcccttcaaactatgtcgaccaaatatagagaacatggtt |
16972522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 29151908 - 29151961
Alignment:
| Q |
274 |
atcggtcccttcaaactatgctcaccaaatatagagaacatggttttcatgtcg |
327 |
Q |
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| T |
29151908 |
atcggtccctttaaactgtacttaccaaatatagagaacatggttctcacgtcg |
29151961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 24419399 - 24419340
Alignment:
| Q |
259 |
gaagcgcctaactcgatcggtcccttcaaactatgctcaccaaatatagagaacatggtt |
318 |
Q |
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| T |
24419399 |
gaagcgactaactcgatcgttcccttcgagctatggtgaccaaatatatagaacatggtt |
24419340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 35432976 - 35433034
Alignment:
| Q |
259 |
gaagcgcctaactcgatcggtcccttcaaactatgctcaccaaatatagagaacatggt |
317 |
Q |
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|||||| |||||| ||||||| |||||||||| || ||||||||||||||||||||| |
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| T |
35432976 |
gaagcgtctaacttgatcggttgattcaaactatacttaccaaatatagagaacatggt |
35433034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 34388355 - 34388306
Alignment:
| Q |
278 |
gtcccttcaaactatgctcaccaaatatagagaacatggttttcatgtcg |
327 |
Q |
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|||||||||||||||||| || ||||||||| |||||| || |||||||| |
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| T |
34388355 |
gtcccttcaaactatgctgactaaatatagataacatgattctcatgtcg |
34388306 |
T |
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