View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_15 (Length: 325)
Name: NF2310_low_15
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 11674163 - 11674371
Alignment:
| Q |
16 |
gaacaataacggctcaaggtggattaaatggaacgccagctggttttgtttttcagttctgcagcatataagcagattctgaccttggcatccaaactgg |
115 |
Q |
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| T |
11674163 |
gaacaataacggctcaagttggattaaatggaacgccagctggttttgtttttcagttctgcaacatataagcagattttgaccttggcatccaaactgg |
11674262 |
T |
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| Q |
116 |
agactagttttcatgcaatcaaatgt---tgatgtctaaagtcccgaagggtggttagagtgggaagggtcctccgaatataagaattcaggaccaggag |
212 |
Q |
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| T |
11674263 |
agactagttttcatgcaatcaaatgttggtgatgtctaaagtcccgaagggtggttagagtgggaagggtcctccgaatataagaaatcaggaccaggag |
11674362 |
T |
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| Q |
213 |
caaatctag |
221 |
Q |
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| T |
11674363 |
caattctag |
11674371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 11674671 - 11674746
Alignment:
| Q |
231 |
gtgaaatggcttaaatctattaaaccaagttccacacaaactagattaaagcaaattacccttattagagttacaa |
306 |
Q |
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| T |
11674671 |
gtgaaatggcttaaatctattaaaccaagttccacacaaactagattaaagaaaattacccttattagagttacaa |
11674746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 11682123 - 11682184
Alignment:
| Q |
233 |
gaaatggcttaaatctattaaaccaagttccacacaaactagattaaagcaaattaccctta |
294 |
Q |
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| T |
11682123 |
gaaatgtcttaaatctattaaaccaagttcgacacaaactagattaaagcaaattaccctta |
11682184 |
T |
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