View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_16 (Length: 320)
Name: NF2310_low_16
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 2853581 - 2853295
Alignment:
| Q |
16 |
attgaaaaggaaaattaaggatttagattctccatgatattgagttatatgtactgattgaatgatatgtggtgtaaatgataactacgtgagaaatgta |
115 |
Q |
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| T |
2853581 |
attgaaaaggaaaattaaggatttagattctccatgatattgagttatatgtactgattgaatgatatgtggtgtaaatgataactacgtgagaaatgta |
2853482 |
T |
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| Q |
116 |
atataaaaaagttttaaatatgattttagtctccacaaatatattatcttatgttgttagtctctgttaacatttgtttgtatactaattaaggtgtgac |
215 |
Q |
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| T |
2853481 |
atagaaaaaagttttaaatatgattttagtctccaca--tatattattttatgttattagtctctgttaacatttgtttgcatactaattaagatgtgac |
2853384 |
T |
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| Q |
216 |
tctctcaacaacccaaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatg |
304 |
Q |
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| T |
2853383 |
tctctcaacaacccaaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatg |
2853295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 2905611 - 2905325
Alignment:
| Q |
16 |
attgaaaaggaaaattaaggatttagattctccatgatattgagttatatgtactgattgaatgatatgtggtgtaaatgataactacgtgagaaatgta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2905611 |
attgaaaaggaaaattaaggatttagattctccatgatattgagttatatgtactgattgaatgatatgtggtgtaaatgataactacgtgagaaatgta |
2905512 |
T |
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| Q |
116 |
atataaaaaagttttaaatatgattttagtctccacaaatatattatcttatgttgttagtctctgttaacatttgtttgtatactaattaaggtgtgac |
215 |
Q |
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| T |
2905511 |
atagaaaaaagttttaaatatgattttagtctccaca--tatattattttatgttattagtctctgttaacatttgtttgcatactaattaagatgtgac |
2905414 |
T |
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| Q |
216 |
tctctcaacaacccaaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatg |
304 |
Q |
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| T |
2905413 |
tctctcaacaacccaaatgccaaatgatggcaataatgatgcgttgttgaataaaaagagcatatagtttgaatcaattttcagggatg |
2905325 |
T |
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