View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_18 (Length: 304)
Name: NF2310_low_18
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 179 - 286
Target Start/End: Complemental strand, 31501857 - 31501750
Alignment:
| Q |
179 |
tgaacttaccaatggctgcagttgtcattgaagaggccttcattttgacaggtgagagtgagctacagccaccctttgaaacgccggtgaacaccgccgg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31501857 |
tgaacttaccaatggctgcagttgtcattgaagaggccttcattttgacaggtgagagtgagctacagccaccctttgaaacgccagtgaacaccgccgg |
31501758 |
T |
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| Q |
279 |
agtaacac |
286 |
Q |
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|||||||| |
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| T |
31501757 |
agtaacac |
31501750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 31502010 - 31501904
Alignment:
| Q |
26 |
caactcaacattttcaaatactaataaaagtttatttaaaacagagcaaaattaaaactttaaactcaacagagatacccattttcccattccaccaata |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31502010 |
caactcaacattttcaaatactaataaaagtttatttaaaacagaacaaaattaaaactttaaactcaacagagatacccattttcccattccaccaata |
31501911 |
T |
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| Q |
126 |
attcatt |
132 |
Q |
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||||||| |
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| T |
31501910 |
attcatt |
31501904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 27612081 - 27612186
Alignment:
| Q |
181 |
aacttaccaatggctgcagttgtcattgaagaggccttcattttgacaggtgagagtgagctacagccaccctttgaaacgccggtgaacaccgccggag |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
27612081 |
aacttaccaatggctgcagttgtcattgaagaggccttcagtttgacaggtgagagtgagctactaccaccctttgaaacgccggtaaacatcgccggag |
27612180 |
T |
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| Q |
281 |
taacac |
286 |
Q |
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|||||| |
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| T |
27612181 |
taacac |
27612186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 181 - 286
Target Start/End: Original strand, 34500604 - 34500709
Alignment:
| Q |
181 |
aacttaccaatggctgcagttgtcattgaagaggccttcattttgacaggtgagagtgagctacagccaccctttgaaacgccggtgaacaccgccggag |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
34500604 |
aacttaccaatggctgcagttgtcattgaagaggccttcagtttgacaggtgagagtgagctactaccaccctttgaaacgccggtaaacatcgccggag |
34500703 |
T |
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| Q |
281 |
taacac |
286 |
Q |
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|||||| |
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| T |
34500704 |
taacac |
34500709 |
T |
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