View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_19 (Length: 303)
Name: NF2310_low_19
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 8518763 - 8518598
Alignment:
| Q |
27 |
agtcttcatcttaataactttctgaggcaaatatcatattctgtactcagccagcttctgtttcataattcatattccaattccttataaaaccatagat |
126 |
Q |
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| T |
8518763 |
agtcttcatcttaataactttctgaggcaaatatcatattctg--ctcagccagcttctgtttcataattcatattccaattccttataaaaccatagat |
8518666 |
T |
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| Q |
127 |
tatgaaaatggggcataacccatatgtcataattaagaagttctctaaccaagtaattttatctaagg |
194 |
Q |
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| T |
8518665 |
tctgaaaatggggcataacccatatgtcataattaagaagttctctaacaaagtaattttatctaagg |
8518598 |
T |
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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 8518553 - 8518504
Alignment:
| Q |
236 |
caagtgaaacaatttttagcaagactttacttaactctcaaacaaattcc |
285 |
Q |
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| T |
8518553 |
caagtgaaacaatttttaacaagattttacttaactctcaaacaaattcc |
8518504 |
T |
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