View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_20 (Length: 276)
Name: NF2310_low_20
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 5139807 - 5139544
Alignment:
| Q |
1 |
ttgatcatacccgcttcatttctcctaacatgagtactcctttatttccatatagatcatatatagtgcaacaaaataattttctttcgtctgcacttaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |
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| T |
5139807 |
ttgatcatacccgcttcatttctcctaacatgagtactcctttatttccatatagatcatatatagtgcaacaaaataattctttttggtctgcacttaa |
5139708 |
T |
|
| Q |
101 |
agtctggatagaaaatatgctctcagccaccgaatcattaatgttcaacacataatgcatgacattccacaaaccaagtctttgccaacattattgcatg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5139707 |
agtctgcatagaaaatatgctctcagccaccgaatcattaatgttcaacacataatgcatgacattccacaaaccaagtctttgccaacattattgcatg |
5139608 |
T |
|
| Q |
201 |
ttttaacattnnnnnnnntgcatgttattttcaacacctacatcactaagcacacacttattca |
264 |
Q |
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|| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5139607 |
ttctaacattaaaaaaaatgcatgttattttcaacacctatatcactaagcacacacttattca |
5139544 |
T |
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