View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_21 (Length: 270)
Name: NF2310_low_21
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 35133096 - 35132837
Alignment:
| Q |
11 |
caaaggagaaggtgaagaagaatggagtgcagatatgtctcagttgctcattggatctaaatttgcttctggtagacacagtagaatctatagaggtgtt |
110 |
Q |
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| T |
35133096 |
caaaggagaaggtgaagaagaatggagtgcagatatgtctcagttgctcattggatctaaatttgcttctggtagacacagtagaatctatagaggtgtt |
35132997 |
T |
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| Q |
111 |
tacaagcaaaaggatgttgcaattaagcttgtgagtcagcctgaagaagatgaagatttggcttcttttcttgagaagcaatttacttctgaagttgctt |
210 |
Q |
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| T |
35132996 |
tacaagcaaaaggatgttgcaattaagcttgtgagtcagcctgaagaagatgaagatttggcttcttttcttgagaagcaatttacttctgaagttgctt |
35132897 |
T |
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| Q |
211 |
tgcttctgaggttgcgtcatccaaatattcttactgtaagtccttgtgctttcttcaatc |
270 |
Q |
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| T |
35132896 |
tgcttctgaggttgcgtcatccaaatattcttactgtaagtccttgtgctttcttcaatc |
35132837 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 43933495 - 43933314
Alignment:
| Q |
33 |
tggagtgcagatatgtctcagttgctcattggatctaaatttgcttctggtagacacagtagaatctatagaggtgtttacaagcaaaaggatgttgcaa |
132 |
Q |
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| T |
43933495 |
tggaatgctgatatgtctcagttattcattggtgccaaatttgattctgggagacatagcaggatctacagaggtatctataagaacatggatgttgcta |
43933396 |
T |
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| Q |
133 |
ttaagcttgtgagtcagcctgaagaagatgaagatttggcttcttttcttgagaagcaatttacttctgaagttgctttgct |
214 |
Q |
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| T |
43933395 |
ttaagcttgttagtcaaccagaagaggatgaggaattggctgctttgcttgagaaacactttacttctgaggttgctttgct |
43933314 |
T |
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