View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_22 (Length: 269)
Name: NF2310_low_22
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 9147470 - 9147709
Alignment:
| Q |
1 |
tgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccattttggtttggatttgaaaaacaa |
100 |
Q |
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| T |
9147470 |
tgtccaacaaaaaccatccatgcatgatcatgcatctactacttaaataaaattgctccatttgtcttcctttccattttggtttggatttgaaaaacaa |
9147569 |
T |
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| Q |
101 |
tatattatatatgcatgtgtgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaatt |
200 |
Q |
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| T |
9147570 |
tatattatatgtgcatgtgtgtgggtatatgtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaact |
9147669 |
T |
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| Q |
201 |
gcacatatttgcatatggtcctgagcctcttaatttgcgg |
240 |
Q |
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| T |
9147670 |
acatatatttgcatatggtcctgcgcctcttaatttgcgg |
9147709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 9141359 - 9141576
Alignment:
| Q |
22 |
gcatgatcatgcatctactacttaaataaaattgctc--catttgtcttcctttccattttggtttggatttgaaaaacaatatattatatatgcatgtg |
119 |
Q |
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| T |
9141359 |
gcatgatcatgcatctactacttaaataaaattgctctccatctgtcttcctttccatctaggtttggaattgaaaaacaagatattatatatgcatgtg |
9141458 |
T |
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| Q |
120 |
tgtgggtataagtatgatattgttatgtaagaactttatgtatcgttaacaaataaagagatttactctactaatagaattgcacatatttgcatatggt |
219 |
Q |
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| T |
9141459 |
tgtgggtatatgtgtgatattgttatgtaagaactttatgtattgttaataaataaagagatttcctctactaatagaactgcacatatttgcatatggt |
9141558 |
T |
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| Q |
220 |
cctgagcctcttaatttg |
237 |
Q |
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| T |
9141559 |
cctgcgcctctttatttg |
9141576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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