View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_24 (Length: 258)
Name: NF2310_low_24
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 239
Target Start/End: Original strand, 50564798 - 50565036
Alignment:
| Q |
14 |
caaagggacaaaataaaaccataatcgttttctaataactatcagagaattacactatttgaaaagtctacaacacatacatttctctcaaagactcaaa |
113 |
Q |
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| T |
50564798 |
caaagggacaaaataaaaccataatcgttttctaataactatcagagaattacactatttgaaaagtctacaacacatacatttctctcaaagactcaaa |
50564897 |
T |
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| Q |
114 |
--------cccacaatacatccacaatctttcaaataaatatctaaaatactcctcataagtcataaaactctaaaacaatagttagaggaagaaaagag |
205 |
Q |
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| T |
50564898 |
cccacaaccccacaatacatccacaatctttcaaataaatatctaaaatactcatcataagtcataaaactctaaaacaatagttagaggaagaaaagag |
50564997 |
T |
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| Q |
206 |
ttagattta-----aatataatcattaaagtgtttatga |
239 |
Q |
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| T |
50564998 |
ttagatttaaatataatataatcattaaagtgtttatga |
50565036 |
T |
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