View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_28 (Length: 240)
Name: NF2310_low_28
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 9147263 - 9147485
Alignment:
| Q |
18 |
ggaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacgcagatattaaatatggc |
117 |
Q |
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| T |
9147263 |
ggaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacacagatattaaatatggc |
9147362 |
T |
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| Q |
118 |
tggtgttttctctctggatctcatgcacaaactgcattcaggaatgtccttaactctgaattcgaaaacctatccttgaagatgcccacagaagtttcca |
217 |
Q |
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| T |
9147363 |
tggtgttttctctctggatctcatgcacaaactgcattcaggaatgcccttaactctgaattcgaaaacctatccttgaagatgccctcagaagtttcca |
9147462 |
T |
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| Q |
218 |
cttaatatgtccaacaaaaacca |
240 |
Q |
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| T |
9147463 |
cttaatatgtccaacaaaaacca |
9147485 |
T |
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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 6803101 - 6803025
Alignment:
| Q |
19 |
gaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatcc |
95 |
Q |
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| T |
6803101 |
gaggaacatcctaacttatgtcagtctcatgctgattgcacgaagaaaggaagtgggagtttttgcgctcgttatcc |
6803025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 7947075 - 7947172
Alignment:
| Q |
29 |
ctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacgcagatattaaatatggctggtgtttt |
126 |
Q |
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| T |
7947075 |
ctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcaaatatggatggtgtttt |
7947172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 7941524 - 7941621
Alignment:
| Q |
29 |
ctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgtaatccaaacgcagatattaaatatggctggtgtttt |
126 |
Q |
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| T |
7941524 |
ctaacttatgtcaatctcatgctgattgcacgaagaaaggaagtggtagcttttgtgctcgttatcctaatcctgatatcgaatatggatggtgtttt |
7941621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 7950483 - 7950547
Alignment:
| Q |
19 |
gaggaagatcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttg |
83 |
Q |
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| T |
7950483 |
gaggaacatcctaacttatgtcagtctcacgctgattgcacgaagaaggaaagtggaagcttttg |
7950547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12128045 - 12128109
Alignment:
| Q |
26 |
atcctaacttatgccagtctcatgccgactgcaagaagaaaggaagtggaagcttttgcgctcgt |
90 |
Q |
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| T |
12128045 |
atcctaacttatgtcaaactcatgccgagtgcatcaagaagggaagtggaaacttttgtgctcgt |
12128109 |
T |
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