View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2310_low_3 (Length: 479)

Name: NF2310_low_3
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2310_low_3
NF2310_low_3
[»] chr3 (6 HSPs)
chr3 (5-479)||(45676128-45676602)
chr3 (40-190)||(43123470-43123621)
chr3 (37-131)||(52741201-52741295)
chr3 (36-80)||(29862119-29862163)
chr3 (37-109)||(49018286-49018358)
chr3 (348-384)||(53786335-53786371)
[»] chr2 (8 HSPs)
chr2 (38-307)||(41867421-41867691)
chr2 (36-187)||(28225322-28225474)
chr2 (37-314)||(20142246-20142524)
chr2 (37-304)||(9684931-9685199)
chr2 (36-138)||(33612224-33612326)
chr2 (344-450)||(18744393-18744497)
chr2 (344-398)||(28225627-28225681)
chr2 (254-295)||(44686958-44686999)
[»] chr5 (7 HSPs)
chr5 (37-384)||(15291462-15291807)
chr5 (36-151)||(38446488-38446603)
chr5 (37-151)||(433615-433729)
chr5 (37-187)||(26212216-26212367)
chr5 (344-384)||(6821643-6821683)
chr5 (39-151)||(35310773-35310885)
chr5 (37-115)||(3113871-3113949)
[»] chr8 (12 HSPs)
chr8 (37-304)||(37517412-37517680)
chr8 (36-151)||(39434989-39435104)
chr8 (37-293)||(500550-500807)
chr8 (40-151)||(24125354-24125465)
chr8 (250-296)||(25021326-25021372)
chr8 (62-115)||(27715670-27715723)
chr8 (38-86)||(4700193-4700241)
chr8 (36-80)||(11610989-11611033)
chr8 (344-398)||(500855-500909)
chr8 (348-398)||(10950624-10950674)
chr8 (348-398)||(10958629-10958679)
chr8 (344-377)||(24125655-24125688)
[»] chr4 (5 HSPs)
chr4 (36-151)||(3330272-3330387)
chr4 (36-109)||(50000637-50000710)
chr4 (36-95)||(12918099-12918158)
chr4 (37-187)||(16957859-16958010)
chr4 (253-398)||(53171038-53171180)
[»] chr1 (6 HSPs)
chr1 (203-399)||(19035917-19036110)
chr1 (36-141)||(34644888-34644993)
chr1 (48-295)||(7434760-7435007)
chr1 (173-464)||(28040489-28040774)
chr1 (40-112)||(36154972-36155044)
chr1 (37-109)||(19035770-19035842)
[»] chr6 (7 HSPs)
chr6 (38-87)||(7200307-7200356)
chr6 (344-398)||(32116263-32116317)
chr6 (36-80)||(357458-357502)
chr6 (42-296)||(8374822-8375076)
chr6 (344-398)||(34305125-34305179)
chr6 (40-97)||(32116015-32116072)
chr6 (39-131)||(28008729-28008821)
[»] chr7 (4 HSPs)
chr7 (37-187)||(4501581-4501732)
chr7 (36-106)||(47679447-47679516)
chr7 (36-109)||(28516999-28517072)
chr7 (344-377)||(47679749-47679782)


Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 5 - 479
Target Start/End: Complemental strand, 45676602 - 45676128
Alignment:
Q  5 tgtctctgtcttcacaaataccctctcgccccctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattaca 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45676602 tgtctttgtcttcacaaataccctctcgccccctgaatatatcaaaaaggacatccataacaaagtcatgcatgtatttgaagtcgggaagctgattaca 45676503  T
Q  105 atgaattgcatactctccaaacgtatctagacacgccatactacaaagagacacactttatcgatagaaaataatgtaatcatgaggtcttatctgatga 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  45676502 atgaattgcatactctccaaacgtatctagacacgccatacgacaaacggacacactttatcaatagaaaataatataatcatgaggtcttatctgatga 45676403  T
Q  205 tagtatgatattctaccggtgacgtttgttgacctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaat 304  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676402 tagtatgatattctactggtgacgtttgttgacctaattcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaat 45676303  T
Q  305 cgctttttgtctttgaggttacgtcaatcttcatttgaacatatcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttctttattggag 404  Q
    || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  45676302 cgttttttgtc-ttgagattacgtcaatcttcatttgaacatatcttgaacacttttactaaaaatagtactcgtcaaaaaaggttgtcctttattggag 45676204  T
Q  405 agatgattttca-tgctaataaaactgctacaatcaaaatctagaatcatacgaggaagactaactaagacattgc 479  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45676203 agatgattttcattgctaataaaattgctacaatcaaaatctagaatcatacgaggaagactaactaagacattgc 45676128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 190
Target Start/End: Original strand, 43123470 - 43123621
Alignment:
Q  40 aatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagacacg 139  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||||| | || |||||  |||||||||||||| | ||  |||   ||||||||||| |    
T  43123470 aatatataaaaaaggacatccctaacaaagtcatgcatgtatttgaaattggaaagcttcttacaatgaattgcttgcttcccagtggtatctagacatg 43123569  T
Q  140 ccatactacaaa-gagacacactttatcgatagaaaataatgtaatcatgag 190  Q
    || ||| |||||  |||||| | | ||| ||||||||||||| ||| |||||    
T  43123570 ccttacgacaaacaagacacgcctcatcaatagaaaataatggaataatgag 43123621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 52741295 - 52741201
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatc 131  Q
    ||||||||||||||||  |||||| |||||||| ||||  |||| || |||||||||||||  ||||||||||   ||||||| ||||| |||||    
T  52741295 ctgaatatatcaaaaattacatccctaacaaagtcatgtctgtacttaaagtcgggaagctccttacaatgaacgacatactccccaaaagtatc 52741201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 29862119 - 29862163
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgta 80  Q
    |||||||||||||||||| |||||| |||||||| ||||| ||||    
T  29862119 cctgaatatatcaaaaagtacatccctaacaaagtcatgcctgta 29862163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 49018286 - 49018358
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaa 109  Q
    ||||||||||||||||| |||||| |||||||| |||| ||||| || || || ||||| |  ||||||||||    
T  49018286 ctgaatatatcaaaaagcacatccctaacaaagtcatgtatgtacttaaaatcaggaagtttcttacaatgaa 49018358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 53786335 - 53786371
Alignment:
Q  348 tcttgaacacttttactaaaaagagtactcgtcaaaa 384  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  53786335 tcttgaacacttttactaaaaagagcactcgccaaaa 53786371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 307
Target Start/End: Complemental strand, 41867691 - 41867421
Alignment:
Q  38 tgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagaca 137  Q
    |||||||||||||||| |||||| |||||||| || |  |||| || ||| |||||||||  ||||||||||| |||| ||| ||||| ||||| |||||    
T  41867691 tgaatatatcaaaaagaacatccctaacaaagtcacgtctgtacttaaagccgggaagctccttacaatgaatggcatgctccccaaaagtatccagaca 41867592  T
Q  138 cgccatactacaaagaga-cacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttga 236  Q
    || | ||| ||||| ||| ||||| | ||| |||| ||||| || |||||| ||    ||||| | ||||||| |||| || || |||||| | || |||    
T  41867591 cgacttacgacaaacagagcacacctcatcaataggaaatagtggaatcataagacgatatctaaggatagtacgatactccactggtgacatatgctga 41867492  T
Q  237 cctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaatcgc 307  Q
    |||||| | ||| |  ||||| ||| ||||||||  | |||||||||||||||||||||  ||||||||||    
T  41867491 cctaacccatcaatcgggatagctagaagaaaattctgagcatgtgctgcttgcaaacattcaaaaatcgc 41867421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 28225322 - 28225474
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctaga 135  Q
    |||||||||||||||||| |||||| |||||||| ||||| |||| || ||| ||| || ||  ||||||||||  |||| ||| ||||| |||||||||    
T  28225322 cctgaatatatcaaaaagtacatccctaacaaagtcatgcctgtacttaaagccggaaaactccttacaatgaacggcatgctccccaaaagtatctaga 28225421  T
Q  136 cacgccatactacaaaga-gacacactttatcgatagaaaataatgtaatcat 187  Q
    |||| | ||| ||||| | | ||||| | ||| || |||||||||| ||||||    
T  28225422 cacgtcttacgacaaacatggcacacctcatcaatggaaaataatggaatcat 28225474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 314
Target Start/End: Complemental strand, 20142524 - 20142246
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||||||||| |||||| |||||||| ||||  |||| || ||| | |||||||  ||||||||||   ||| ||| ||||| ||||| ||||    
T  20142524 ctgaatatatcaaaaagtacatccctaacaaagtcatgtctgtacttaaagcctggaagctccttacaatgaacgacatgctccccaaaagtatccagac 20142425  T
Q  137 acgccatactacaaaga-gacacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttg 235  Q
    ||||| ||| ||||| | | ||||| | |||  ||| ||||| || |||||| |||   ||||| | |||||||  ||| || || | |||| | || ||    
T  20142424 acgccttacgacaaacagggcacacctcatcattaggaaatagtggaatcataaggcgatatctaaggatagtacaatactccactgttgacatatgctg 20142325  T
Q  236 acctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaatcgctttttgt 314  Q
    || |||| | ||| |  ||||| ||| ||||||||| | |||||||||||||||||||||  ||||||| || ||||||    
T  20142324 acttaacccatcaatcgggatagctagaagaaaatcctgagcatgtgctgcttgcaaacatccaaaaattgccttttgt 20142246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 304
Target Start/End: Complemental strand, 9685199 - 9684931
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||| ||||| |||||| |||||||| ||||  |||| || ||| |||||||||  ||||||||||   |   ||| ||||| ||||| ||||    
T  9685199 ctgaatatatcgaaaagtacatccctaacaaagtcatgtctgtacttaaagccgggaagctccttacaatgaacgacgcgctccccaaaagtatccagac 9685100  T
Q  137 acgccatactacaaagaga-cacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttg 235  Q
    ||||| ||| ||||| ||  ||| | | ||| |||| ||||| || |||| | |||   ||||| | ||||||| |||| || || |||||| | || ||    
T  9685099 acgccttacgacaaacagggcacgcctcatcaataggaaatagtggaatcgtaaggcgatatctaaggatagtacgatactccactggtgacatatgctg 9685000  T
Q  236 acctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaat 304  Q
    ||||||| | ||| || ||||| ||| ||||||||| | || ||||||||||||||||||  |||||||    
T  9684999 acctaacccatcaatagggatagctagaagaaaatcttgagtatgtgctgcttgcaaacatccaaaaat 9684931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 33612326 - 33612224
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctaga 135  Q
    |||||||||||||||||| |||||| | |||||| |||| ||||| || || || |||||||  ||||||||| ||| || ||| ||||| ||||| |||    
T  33612326 cctgaatatatcaaaaagaacatccctgacaaagtcatgtatgtacttaaaatctggaagctccttacaatgagttgtatgctccccaaaagtatccaga 33612227  T
Q  136 cac 138  Q
    |||    
T  33612226 cac 33612224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 450
Target Start/End: Complemental strand, 18744497 - 18744393
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttctttattggagagatgattttcatgctaataaaactgctacaatcaaaat 443  Q
    |||||| |||||||||||||||||||||| ||||| ||||| | ||||| |||||  ||||||| | | |   ||||| |||||||||||  ||||||||    
T  18744497 catatcctgaacacttttactaaaaagagcactcgccaaaacatgttgtgcttta--ggagagacggtgtctttgctagtaaaactgctaacatcaaaat 18744400  T
Q  444 ctagaat 450  Q
    || ||||    
T  18744399 ctggaat 18744393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 28225627 - 28225681
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttcttta 398  Q
    ||||||||||||| ||||||||||||||| ||||| ||||| | ||||| |||||    
T  28225627 catatcttgaacaattttactaaaaagagcactcgccaaaatatgttgtgcttta 28225681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 44686958 - 44686999
Alignment:
Q  254 gataactataagaaaatcataagcatgtgctgcttgcaaaca 295  Q
    |||| ||| ||||||||| |||||||||||||||||||||||    
T  44686958 gatagctagaagaaaatcttaagcatgtgctgcttgcaaaca 44686999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 37 - 384
Target Start/End: Complemental strand, 15291807 - 15291462
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||||||||| || ||| |||||||| ||||  |||| || ||| |||||||||  ||||||||||   ||| ||| ||||| ||||| ||||    
T  15291807 ctgaatatatcaaaaagtacgtccctaacaaagtcatgtttgtacttaaagccgggaagctccttacaatgaacaacatgctccccaaaagtatccagac 15291708  T
Q  137 acgccatactacaaaga-gacacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttg 235  Q
    ||||| ||| | ||| | ||||||| | ||| |||||||||| || ||||||  |    ||||| | ||||||| |||| || || |||||| | || ||    
T  15291707 acgccttacgataaacatgacacacctcatcaatagaaaatagtggaatcatacgacgatatctaaggatagtacgatactccactggtgacatatgctg 15291608  T
Q  236 acctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaatcgctttttgtctttgaggttacgtcaatctt 335  Q
    ||||||| | ||| |  ||||| ||| |||||||||   |||||||||||||||||||||  | ||||| || || |||||  | ||| | ||||| |||    
T  15291607 acctaacccatcaattgggatagctagaagaaaatcccgagcatgtgctgcttgcaaacatcccaaaattgccttctgtctc-gtggtcatgtcaaactt 15291509  T
Q  336 catttgaacatatcttgaacacttttactaaaaagagtactcgtcaaaa 384  Q
     | ||   ||||||||||||||||||||||||||||| |||||||||||    
T  15291508 aacttc--catatcttgaacacttttactaaaaagagcactcgtcaaaa 15291462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 38446488 - 38446603
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctaga 135  Q
    |||||||||||||||||| |||||| |||||||| |||||||||| || |||| ||||||||  ||||||||||  |||  ||| | ||| |||||||||    
T  38446488 cctgaatatatcaaaaagtacatccctaacaaagtcatgcatgtacttaaagttgggaagctccttacaatgaacggcacgctccctaaaagtatctaga 38446587  T
Q  136 cacgccatactacaaa 151  Q
     ||||| ||| |||||    
T  38446588 tacgccttacgacaaa 38446603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 151
Target Start/End: Original strand, 433615 - 433729
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    |||||||||||||| || |||||| |||||||| ||||| |||| || |||| ||||||||  ||||||||||   ||| ||| ||||| ||||| ||||    
T  433615 ctgaatatatcaaatagtacatccctaacaaagtcatgcctgtacttaaagttgggaagctccttacaatgaacgacatgctccccaaaagtatccagac 433714  T
Q  137 acgccatactacaaa 151  Q
    ||||| ||| |||||    
T  433715 acgccttacgacaaa 433729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 26212367 - 26212216
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||||||||| |||||| |||||||  |||| ||||| || ||| || ||||||  ||||||| ||   ||| ||| ||||| ||||| || |    
T  26212367 ctgaatatatcaaaaagtacatccctaacaaaatcatgtatgtacttaaagccgagaagctccttacaataaacgacatgctccccaaaagtatccaggc 26212268  T
Q  137 acgccatactacaaaga-gacacactttatcgatagaaaataatgtaatcat 187  Q
    ||||| ||| ||||| | ||||||||| ||| |||| |||||||| ||||||    
T  26212267 acgccttacgacaaacaggacacacttcatcaataggaaataatgaaatcat 26212216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 6821683 - 6821643
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactcgtcaaaa 384  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  6821683 catatcttgaacacttttactaaaaagagcactcgccaaaa 6821643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 35310773 - 35310885
Alignment:
Q  39 gaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagacac 138  Q
    |||||||||||||||||||||| |||||||| ||||  |||| || |||  || |||||  ||||||||||   ||||||| ||||| ||||  ||||||    
T  35310773 gaatatatcaaaaaggacatccctaacaaagtcatgtctgtacttaaagctggaaagctccttacaatgaacaacatactccccaaaagtattcagacac 35310872  T
Q  139 gccatactacaaa 151  Q
    ||| ||| |||||    
T  35310873 gccttacaacaaa 35310885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 3113949 - 3113871
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcat 115  Q
    |||||||||||||||||||||||| |||||||| ||||  |||| || ||| | | |||||  |||||||||| |||||    
T  3113949 ctgaatatatcaaaaaggacatccctaacaaagtcatgtttgtacttaaagccagaaagctccttacaatgaactgcat 3113871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 37 - 304
Target Start/End: Original strand, 37517412 - 37517680
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||||||||| |||||| |||||||| ||||  |||| || |||||||||||||  ||||||||||  |||| ||| ||| | | ||| | ||    
T  37517412 ctgaatatatcaaaaagtacatccctaacaaagtcatgtctgtacttaaagtcgggaagctccttacaatgaacggcatgctccccagaagaatccacac 37517511  T
Q  137 acgccatactacaaaga-gacacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttg 235  Q
    ||| | ||| | ||| | | ||||| | ||| |||| ||||| || |||||| |||   ||||| | |||| ||||||| || || |||||| | |||||    
T  37517512 acgtcttacgataaacagggcacacctcatcaataggaaatagtggaatcataaggcgatatctaaggatattatgatactccactggtgacatatgttg 37517611  T
Q  236 acctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaat 304  Q
    ||||||| | ||| |  |||||  || ||||||||||| |||||||||||||||||||||  |||||||    
T  37517612 acctaacccatcaatcgggatacttagaagaaaatcatgagcatgtgctgcttgcaaacatccaaaaat 37517680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 39434989 - 39435104
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctaga 135  Q
    |||||||||||||||||| |||||| |||||||| ||||| |||| || ||| ||||||| |  ||||||||||  |||| ||| ||||| ||||| |||    
T  39434989 cctgaatatatcaaaaagtacatccctaacaaagtcatgcctgtacttaaagccgggaagttctttacaatgaacggcatgctccccaaaagtatccaga 39435088  T
Q  136 cacgccatactacaaa 151  Q
    |||||| ||| |||||    
T  39435089 cacgccttacgacaaa 39435104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 293
Target Start/End: Original strand, 500550 - 500807
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||||||||| |||||| |||||||  |||||||||| || ||||||||| |||  ||||||||||   ||| ||| ||||| |||||||| |    
T  500550 ctgaatatatcaaaaagtacatccctaacaaaatcatgcatgtacttaaagtcgggatgctccttacaatgaacgacatgctccccaaaagtatctaggc 500649  T
Q  137 acgccatactacaaaga-gacacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttg 235  Q
    | ||| ||| ||||| | | ||||| | ||| |||| ||||| || |||| | |||   ||||| | ||||||| | || || |  |||||| | || ||    
T  500650 atgccttacaacaaacaggtcacacctcatcaataggaaatattggaatcgtaaggcaatatctaaggatagtacggtactccattggtgacatatgctg 500749  T
Q  236 acctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaa 293  Q
    ||||||||| ||| |  ||||  ||| ||||||||||| ||||| |||||||||||||    
T  500750 acctaactcatcaatcaggattgctagaagaaaatcatgagcatatgctgcttgcaaa 500807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 24125354 - 24125465
Alignment:
Q  40 aatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagacacg 139  Q
    |||||||||||||| |||||| |||||||| ||||  |||| || |||||||||||||  ||| ||||||  |||| ||| ||||| ||||| |||||||    
T  24125354 aatatatcaaaaagtacatccctaacaaagtcatgtttgtacttaaagtcgggaagctccttaaaatgaacggcatgctccccaaaagtatccagacacg 24125453  T
Q  140 ccatactacaaa 151  Q
    || ||| |||||    
T  24125454 ccttacgacaaa 24125465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 296
Target Start/End: Complemental strand, 25021372 - 25021326
Alignment:
Q  250 tatggataactataagaaaatcataagcatgtgctgcttgcaaacac 296  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||    
T  25021372 tatggataactagaagaaaatcttgagcatgtgctgcttgcaaacac 25021326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 27715670 - 27715723
Alignment:
Q  62 taacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcat 115  Q
    |||||||| | |||||||||||||||||| ||||||  ||||||||||||||||    
T  27715670 taacaaagtcgtgcatgtatttgaagtcgagaagctccttacaatgaattgcat 27715723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 4700193 - 4700241
Alignment:
Q  38 tgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaa 86  Q
    ||||||||| ||||||||||||| ||| |||| ||||||||||||||||    
T  4700193 tgaatatataaaaaaggacatccctaagaaagtcatgcatgtatttgaa 4700241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 11611033 - 11610989
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgta 80  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||    
T  11611033 cctgaatatatcaaaaaggacatccgtaacaaagtcatgaatgta 11610989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 500855 - 500909
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttcttta 398  Q
    |||||||||||||||||||||||||| || ||||| ||||| | ||||| |||||    
T  500855 catatcttgaacacttttactaaaaaaagcactcgccaaaacatgttgtgcttta 500909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 10950674 - 10950624
Alignment:
Q  348 tcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttcttta 398  Q
    |||||||||||||||||| |||||| ||||||||||| | ||||| |||||    
T  10950674 tcttgaacacttttactataaagagcactcgtcaaaacatgttgtgcttta 10950624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Complemental strand, 10958679 - 10958629
Alignment:
Q  348 tcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttcttta 398  Q
    |||||||||||||||||| |||||| ||||||||||| | ||||| |||||    
T  10958679 tcttgaacacttttactataaagagcactcgtcaaaacatgttgtgcttta 10958629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 24125655 - 24125688
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactc 377  Q
    ||||||||||||||||||||||||||||| ||||    
T  24125655 catatcttgaacacttttactaaaaagagcactc 24125688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 3330272 - 3330387
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctaga 135  Q
    |||||||||||||||||| |||||| |||||||| ||||| |||| || ||| |||||||||  ||||||||||| |||| ||| ||||| ||||  |||    
T  3330272 cctgaatatatcaaaaagtacatccctaacaaagtcatgcctgtacttaaagccgggaagctccttacaatgaatggcatgctccccaaaagtatacaga 3330371  T
Q  136 cacgccatactacaaa 151  Q
    |||||| ||| |||||    
T  3330372 cacgccttacgacaaa 3330387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 50000710 - 50000637
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaa 109  Q
    |||||||||||||||||| |||||| |||||||| ||||  ||||||| |||||||||||||  ||||||||||    
T  50000710 cctgaatatatcaaaaagtacatccttaacaaagtcatgtctgtatttaaagtcgggaagctccttacaatgaa 50000637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 12918158 - 12918099
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaag 95  Q
    |||||||||||||||||| |||||| |||||||| ||| |||||| || |||||||||||    
T  12918158 cctgaatatatcaaaaagtacatccctaacaaagtcatacatgtacttaaagtcgggaag 12918099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 16957859 - 16958010
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||||||||| |||||| ||| |||| |||| ||||| || ||||| |||||||  ||||||||||    || ||| ||||| |||||||| |    
T  16957859 ctgaatatatcaaaaagtacatccctaaaaaagtcatgtatgtacttaaagtcaggaagctccttacaatgaacgatatgctccccaaaagtatctaggc 16957958  T
Q  137 acgccatactacaaa-gagacacactttatcgatagaaaataatgtaatcat 187  Q
    ||||| ||| |||||  || ||||| | ||| |||||||||| || ||||||    
T  16957959 acgccttacgacaaacaaggcacacctcatcaatagaaaatagtggaatcat 16958010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 398
Target Start/End: Original strand, 53171038 - 53171180
Alignment:
Q  253 ggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaaatcgctttttgtctttgaggttacgtcaatcttcatttgaacatatcttg 352  Q
    ||||| ||| ||||||||| | |||||||||||||||||||||  ||||||| | ||| | |||  | ||||| ||||| ||| | ||   ||||| |||    
T  53171038 ggatagctagaagaaaatcctgagcatgtgctgcttgcaaacatccaaaaattgttttctttctc-gtggttatgtcaaacttaacttc--catattttg 53171134  T
Q  353 aacacttttactaaaaagagtactcgtcaaaaaaggttgttcttta 398  Q
    |||||||||||||||||||| ||||| ||||| | ||||| |||||    
T  53171135 aacacttttactaaaaagagcactcgccaaaacatgttgtgcttta 53171180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 203 - 399
Target Start/End: Original strand, 19035917 - 19036110
Alignment:
Q  203 gatagtatgatattctaccggtgacgtttgttgacctaactcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacacacaaaa 302  Q
    |||||||||||| || || |||||| | |||||||||||||| ||| |  ||||| ||| |||||||||   ||||||||||||||||| |||  |||||    
T  19035917 gatagtatgatactccactggtgacatatgttgacctaactcatcaatcgggatagctagaagaaaatcccgagcatgtgctgcttgcagacatccaaaa 19036016  T
Q  303 atcgctttttgtctttgaggttacgtcaatcttcatttgaacatatcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttctttat 399  Q
    || || ||||||| | | ||| | ||||| ||| | ||   |||||| |||||||||||||||||||||| ||||| ||||| | ||||| ||||||    
T  19036017 attgccttttgtc-tcgtggtcatgtcaaacttaactt--ccatatcctgaacacttttactaaaaagagcactcgccaaaacatgttgtgctttat 19036110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 141
Target Start/End: Original strand, 34644888 - 34644993
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctaga 135  Q
    |||||||||||||||||| |||||| ||| |||| ||||| |||| || |||||||||||||  ||||||||||   ||| ||| ||||| ||||| |||    
T  34644888 cctgaatatatcaaaaagtacatccctaataaagtcatgcctgtacttaaagtcgggaagctctttacaatgaacgacatgctcgccaaaagtatccaga 34644987  T
Q  136 cacgcc 141  Q
    ||||||    
T  34644988 cacgcc 34644993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 295
Target Start/End: Original strand, 7434760 - 7435007
Alignment:
Q  48 aaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagacacgccatacta 147  Q
    ||||| ||||||| |||||||| ||||  ||||||||||||||| ||| |  |||||||||| | ||| ||| ||||| | ||||||||||||| |||      
T  7434760 aaaaaagacatccctaacaaagtcatgtctgtatttgaagtcggaaagttccttacaatgaacttcatgctccccaaatgcatctagacacgccttacgg 7434859  T
Q  148 caaagagacacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttgacctaactcgtc 247  Q
     ||  | |||  | | ||| |||| |||||||  ||||||||||   ||| ||| ||||||| | |||||||| ||| || | |||| ||||||| ||||    
T  7434860 taacaaaacaagcctcatcaataggaaataatagaatcatgaggcgatatatgaggatagtaaggtattctactggtaacatatgttaacctaacccgtc 7434959  T
Q  248 attatggataactataagaaaatcataagcatgtgctgcttgcaaaca 295  Q
    | || |||||| || || || ||| | | ||||||||||||| |||||    
T  7434960 aatagggataaatagaaaaagatcttgaacatgtgctgcttgtaaaca 7435007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 464
Target Start/End: Complemental strand, 28040774 - 28040489
Alignment:
Q  173 aaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttgacctaactcgtcattatggataactataagaaaatca 272  Q
    |||||||| |||||| |||   ||||| | |||||||||||| || || |||||| | ||||||||||||   ||| |  ||||| ||| |||||||||     
T  28040774 aaataatggaatcataaggcgatatctaaggatagtatgatactccactggtgacatatgttgacctaaccaatcaatcgggatagctagaagaaaatct 28040675  T
Q  273 taagcatgtgctgcttgcaaacacacaaaaatcgctttttgtctttgaggttacgtcaatcttcatttgaacatatcttgaacacttttactaaaaagag 372  Q
    | ||||||| |||||||||||||  ||||||| || || |||| | | ||| | ||||| ||| ||||   |||||| || ||| |||||||||||||||    
T  28040674 tgagcatgttctgcttgcaaacatccaaaaattgccttctgtc-tcgtggtcatgtcaaacttaattt--ccatatcctg-acatttttactaaaaagag 28040579  T
Q  373 tactcgtcaaaaaaggttgttctttattggagagatgattttcatgctaataaaactgctacaatcaaaatctagaatcatacgaggaagac 464  Q
     |||||  |||| | ||||| |||||  |||| |||| | |   ||||| |||||||||||  |||||||||||||||| ||| | ||||||    
T  28040578 cactcgcaaaaacatgttgtgcttta--ggagggatggtgtcattgctagtaaaactgctaacatcaaaatctagaatcgtaccacgaagac 28040489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 36155044 - 36154972
Alignment:
Q  40 aatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattg 112  Q
    ||||||||||| ||||||||  |||||||| || || |||||||||||| ||||||||  |||||| ||||||    
T  36155044 aatatatcaaagaggacatctgtaacaaagtcacgcttgtatttgaagttgggaagcttcttacaacgaattg 36154972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 19035770 - 19035842
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaa 109  Q
    |||| |||||||||||| |||||| |||||||  ||||  |||| || |||||||||||||  ||||||||||    
T  19035770 ctgagtatatcaaaaagtacatccctaacaaattcatgtctgtacttaaagtcgggaagctccttacaatgaa 19035842  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 7200356 - 7200307
Alignment:
Q  38 tgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaag 87  Q
    ||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  7200356 tgaatatatcaaaaaggacatccctaacaaagttatgcatgtatttgaag 7200307  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 32116263 - 32116317
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttcttta 398  Q
    ||||||||||||||||||||||||||||  ||||||||||| | ||||| |||||    
T  32116263 catatcttgaacacttttactaaaaagatcactcgtcaaaacatgttgtgcttta 32116317  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 357502 - 357458
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgta 80  Q
    |||||||||||||||||| |||||| |||||||| ||||||||||    
T  357502 cctgaatatatcaaaaagtacatccctaacaaaggcatgcatgta 357458  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 296
Target Start/End: Complemental strand, 8375076 - 8374822
Alignment:
Q  42 tatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagacacgcc 141  Q
    |||||||||||| ||||||||||||||    ||| | |||||||||  ||||||||  |||||||||| |  || ||| ||||| ||||| ||||||| |    
T  8375076 tatatcaaaaagaacatccataacaaatttgtgcctttatttgaagcagggaagctccttacaatgaactttatgctccccaaaggtatccagacacgtc 8374977  T
Q  142 atactacaaagagacacactttatcgatagaaaataatgtaatcatgaggtcttatctgatgatagtatgatattctaccggtgacgtttgttgacctaa 241  Q
     || | |||| ||  |||| | ||| ||||||| ||||| |||||| | |   ||| ||| ||||||| |||| ||||  |||||| | ||||| | |||    
T  8374976 ttattgcaaacagtgacacctcatcaatagaaagtaatggaatcataatgcgatatatgaggatagtacgatactctattggtgacatatgttggcttaa 8374877  T
Q  242 ctcgtcattatggataactataagaaaatcataagcatgtgctgcttgcaaacac 296  Q
    | | ||| || ||||| ||| ||||||||  | |||||||| || ||||||||||    
T  8374876 cccatcaataaggatagctagaagaaaatattgagcatgtgttgtttgcaaacac 8374822  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 34305125 - 34305179
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactcgtcaaaaaaggttgttcttta 398  Q
    ||||||||||||| ||||||||||||||| ||||| ||||| | ||||| |||||    
T  34305125 catatcttgaacaattttactaaaaagagcactcgccaaaacatgttgtgcttta 34305179  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 32116015 - 32116072
Alignment:
Q  40 aatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagct 97  Q
    |||||||||||||| |||||| |||||||| |||| ||||| || |||| ||||||||    
T  32116015 aatatatcaaaaagtacatccctaacaaagtcatgtatgtacttaaagttgggaagct 32116072  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 28008821 - 28008729
Alignment:
Q  39 gaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatc 131  Q
    ||||||||||| |||||||||| ||| |||| ||||  |||| || ||||| | |||||  ||||||| |||||||| ||| ||||| |||||    
T  28008821 gaatatatcaagaaggacatccctaataaagtcatgtttgtacttaaagtcagaaagctccttacaataaattgcatgctccccaaaagtatc 28008729  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 4501581 - 4501732
Alignment:
Q  37 ctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaattgcatactctccaaacgtatctagac 136  Q
    ||||||||||||||||| |||||| ||| |||| | ||  |||| || |||||||||||||  ||||||||||   |||  || ||||| ||||| || |    
T  4501581 ctgaatatatcaaaaagtacatccctaataaagtcgtgtgtgtacttaaagtcgggaagctccttacaatgaacgacatggtccccaaaagtatccaggc 4501680  T
Q  137 acgccatactacaaaga-gacacactttatcgatagaaaataatgtaatcat 187  Q
    ||||| ||| ||||| | ||||||| | ||| ||||||||||||| ||||||    
T  4501681 acgccttacgacaaacatgacacacctcatcaatagaaaataatggaatcat 4501732  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 47679447 - 47679516
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaat 106  Q
    |||||||||||||||||| |||||| |||||||| | || ||||| || |||||||||||||  |||||||    
T  47679447 cctgaatatatcaaaaagtacatccctaacaaagtcgtg-atgtacttaaagtcgggaagcttcttacaat 47679516  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 28517072 - 28516999
Alignment:
Q  36 cctgaatatatcaaaaaggacatccataacaaagacatgcatgtatttgaagtcgggaagctgattacaatgaa 109  Q
    |||||||||||||||||| |||||| |||||||| ||||| |||| || |||  | ||||||  ||||||||||    
T  28517072 cctgaatatatcaaaaagtacatccctaacaaagtcatgcttgtacttaaagctgagaagctccttacaatgaa 28516999  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 377
Target Start/End: Original strand, 47679749 - 47679782
Alignment:
Q  344 catatcttgaacacttttactaaaaagagtactc 377  Q
    ||||||||||||| ||||||||||||||||||||    
T  47679749 catatcttgaacaattttactaaaaagagtactc 47679782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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