View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2310_low_7 (Length: 443)
Name: NF2310_low_7
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2310_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 27779810 - 27780233
Alignment:
| Q |
19 |
gaaaaagtcaatggattgttcctcttttgttctcttttcagagcagatgtcaaaatttgaacttcaaagtatactagacttggtataagagtgtgccttt |
118 |
Q |
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| T |
27779810 |
gaaaaagtcaatggattgttcctcttttgttctcttttcagaactgatgtcaaaatttga-cttcaaagtatactagacttggtataagagtgtgccttt |
27779908 |
T |
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| Q |
119 |
tttaggaagattgtggatttgtggtagctatgaagattcatgtttattaatgggaactaatgaaagaggtaggaaacgcgtggcctggttcgagaagtgg |
218 |
Q |
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| T |
27779909 |
tttaggaagattgtggatttgtggtagctatgaagattcatgtttattaatgggaactaatgaaagaggtaggaaatgcgtggcctggttcgagaagtgg |
27780008 |
T |
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| Q |
219 |
catggatagcaaacaaatagattcaagtagtaaatttgtcgaacaaaaaatataaattaattggttgaaagagagaagaaatttaaatagtttctatgta |
318 |
Q |
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| T |
27780009 |
catggatagcaaacaaatagattcaagtagtaaatttgtggaacaaaaaatataaattaattggttgaaagggagaagaaatttaaatagtttctatgta |
27780108 |
T |
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| Q |
319 |
aaaaccagctaattgatgtgttttcatgtcgttttggtgcttctaatcttgagattctaatcatcgacattgatacaagtgactctgttgatgtgccaag |
418 |
Q |
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| T |
27780109 |
aaaaccagctaattgatgtgttttcatatcgttttgatgcttctaatcttgagattctaatcatcgatattgatacaagtgactctgttgatgtgccaag |
27780208 |
T |
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| Q |
419 |
ttcattcttcaaataaccttacctt |
443 |
Q |
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| T |
27780209 |
ttcattcttcaaataaccttacctt |
27780233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 385
Target Start/End: Original strand, 27772537 - 27772698
Alignment:
| Q |
223 |
gatagcaaacaaatagattcaagtagtaaatttgtcgaacaaaaaatataaattaattggttgaaagagagaagaaatttaaatagtttctatgtaaaaa |
322 |
Q |
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|||||| |||||| ||||||||| ||||||| | || ||||||||| | ||| | | || ||||||||||||| || ||||||| || |||||| ||| |
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| T |
27772537 |
gatagcgaacaaagagattcaagcagtaaatctatcaaacaaaaaaca-aaagtcactgattgaaagagagaaaaatattaaatatttgctatgtgaaag |
27772635 |
T |
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| Q |
323 |
ccagctaattgatgtgttttcatgtcgttttggtgcttctaatcttgagattctaatcatcga |
385 |
Q |
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| T |
27772636 |
caagctaatggatgtattttcgggtacaattgatggttctaaacttgagattctaatcgtcga |
27772698 |
T |
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