View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2310_low_8 (Length: 427)

Name: NF2310_low_8
Description: NF2310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2310_low_8
NF2310_low_8
[»] chr6 (5 HSPs)
chr6 (18-419)||(32297813-32298230)
chr6 (189-245)||(6751881-6751937)
chr6 (190-239)||(19369827-19369876)
chr6 (205-249)||(10031570-10031614)
chr6 (208-248)||(29711263-29711303)
[»] chr7 (4 HSPs)
chr7 (188-239)||(5937419-5937470)
chr7 (205-237)||(18678160-18678192)
chr7 (192-244)||(22801743-22801795)
chr7 (205-237)||(35238199-35238231)
[»] scaffold0314 (1 HSPs)
scaffold0314 (214-248)||(8949-8983)
[»] chr8 (2 HSPs)
chr8 (150-237)||(42874534-42874619)
chr8 (191-256)||(24295138-24295203)
[»] chr2 (2 HSPs)
chr2 (189-239)||(43586004-43586054)
chr2 (214-243)||(2356382-2356411)
[»] chr1 (4 HSPs)
chr1 (190-252)||(24462270-24462332)
chr1 (206-256)||(40317832-40317882)
chr1 (205-241)||(18946049-18946085)
chr1 (187-235)||(33313483-33313530)
[»] chr5 (1 HSPs)
chr5 (205-254)||(30080516-30080565)
[»] chr3 (1 HSPs)
chr3 (191-244)||(14338484-14338537)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 32298230 - 32297813
Alignment:
Q  18 acaattatcagttttccatatctttgattgtcttatgtattgtttttaatctttctttaagcatcatttggtttaaatgat---------------agta 102  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||               ||||    
T  32298230 acaattatcagttttccatatctttgattgtcttatgtattttttttaatctttctttaagcatcatttggtttaaatgatttggatttaaacgatagta 32298131  T
Q  103 gtattttagtacacatcattatgacttcagttccaccgacatttttt-attgaatgcgtgtctcgtgtctgatatgtgtcgtgtacaccgacactgacat 201  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  32298130 gtattttagtacacatcattatgacttcagttccatcgacatttttttattgaatgcgtgtctcgtgtctgatatgtgtcgtgtacactgacactgacat 32298031  T
Q  202 ttctgattataatgaattatgtcattttctcaaaatttgatcgatgtcgacatgtaaatgtcagtgtccggtgttcatgtctgcgttcatggtttataca 301  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  32298030 ttctaattataatgaattatatcattttctcaaaatttgatcggtgtcgacgtgtaaatgtcagtgtccggtgttcatgtctgtgttcgtggtttataca 32297931  T
Q  302 ttatagattatgattcttctataaggccggcaccatcgacatatataaccactgaaacagtgtggacaatgtgatctaatggacatggatacattgctat 401  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32297930 ttatagattatgattcttctataaggccggcaccatcaacatatataaccactgaaacagtgtggacaatgtgatctaatggacatggatacattgctat 32297831  T
Q  402 ctccacatttatattctt 419  Q
    |||||||||||| |||||    
T  32297830 ctccacatttattttctt 32297813  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 6751881 - 6751937
Alignment:
Q  189 ccgacactgacatttctgattataatgaattatgtcattttctcaaaatttgatcga 245  Q
    ||||||| |||| || |||||| | |||||||||||||||||||||||||| |||||    
T  6751881 ccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttatcga 6751937  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 239
Target Start/End: Complemental strand, 19369876 - 19369827
Alignment:
Q  190 cgacactgacatttctgattataatgaattatgtcattttctcaaaattt 239  Q
    |||||| |||| || |||||| | ||||||||||||||||||||||||||    
T  19369876 cgacaccgacacttgtgattacattgaattatgtcattttctcaaaattt 19369827  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 10031614 - 10031570
Alignment:
Q  205 tgattataatgaattatgtcattttctcaaaatttgatcgatgtc 249  Q
    |||||| | |||||||||||||||||||||||||| |||| ||||    
T  10031614 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 10031570  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 29711303 - 29711263
Alignment:
Q  208 ttataatgaattatgtcattttctcaaaatttgatcgatgt 248  Q
    |||||||||||||||||||||||||||| | | ||||||||    
T  29711303 ttataatgaattatgtcattttctcaaattattatcgatgt 29711263  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 5937419 - 5937470
Alignment:
Q  188 accgacactgacatttctgattataatgaattatgtcattttctcaaaattt 239  Q
    |||||||| |||| || |||||| | ||||||||||||||||||||||||||    
T  5937419 accgacacagacacttgtgattacattgaattatgtcattttctcaaaattt 5937470  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 18678192 - 18678160
Alignment:
Q  205 tgattataatgaattatgtcattttctcaaaat 237  Q
    |||||||| ||||||||||||||||||||||||    
T  18678192 tgattatattgaattatgtcattttctcaaaat 18678160  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 22801743 - 22801795
Alignment:
Q  192 acactgacatttctgattataatgaattatgtcattttctcaaaatttgatcg 244  Q
    |||| |||| || |||||| | |||||||||||||| ||||||||||||||||    
T  22801743 acaccgacacttgtgattacagtgaattatgtcattatctcaaaatttgatcg 22801795  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 35238199 - 35238231
Alignment:
Q  205 tgattataatgaattatgtcattttctcaaaat 237  Q
    |||||||| ||||||||||||||||||||||||    
T  35238199 tgattatattgaattatgtcattttctcaaaat 35238231  T

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Target: scaffold0314 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 8983 - 8949
Alignment:
Q  214 tgaattatgtcattttctcaaaatttgatcgatgt 248  Q
    |||||||||||||||||||||||||| ||||||||    
T  8983 tgaattatgtcattttctcaaaattttatcgatgt 8949  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 42874619 - 42874534
Alignment:
Q  150 attgaatgcgtgtctcg-tgtctgatatgtgtcgtgtacaccgacactgacatttctgattataatgaattatgtcattttctcaaaat 237  Q
    |||||| |||||||||| |||| || |||||| |||| ||   ||||||||| || |||||| | ||||||||||||||||||||||||    
T  42874619 attgaaggcgtgtctcgatgtccgacatgtgttgtgtcca---acactgacacttgtgattacattgaattatgtcattttctcaaaat 42874534  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 24295138 - 24295203
Alignment:
Q  191 gacactgacatttctgattataatgaattatgtcattttctcaaaatttgatcgatgtcgacatgt 256  Q
    ||||| |||| || |||||| | | |||| ||||||||||||| ||||| ||||||||||||||||    
T  24295138 gacaccgacacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtcgacatgt 24295203  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 43586004 - 43586054
Alignment:
Q  189 ccgacactgacatttctgattataatgaattatgtcattttctcaaaattt 239  Q
    ||||||| |||| || |||||| | ||||||||||||||||||||||||||    
T  43586004 ccgacaccgacacttgtgattacattgaattatgtcattttctcaaaattt 43586054  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 2356382 - 2356411
Alignment:
Q  214 tgaattatgtcattttctcaaaatttgatc 243  Q
    ||||||||||||||||||||||||||||||    
T  2356382 tgaattatgtcattttctcaaaatttgatc 2356411  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 252
Target Start/End: Original strand, 24462270 - 24462332
Alignment:
Q  190 cgacactgacatttctgattataatgaattatgtcattttctcaaaatttgatcgatgtcgac 252  Q
    ||||||||| | || |||||| | |||||||||||||||| |||||||||||||  |||||||    
T  24462270 cgacactgaaacttgtgattacattgaattatgtcattttttcaaaatttgatcagtgtcgac 24462332  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 40317832 - 40317882
Alignment:
Q  206 gattataatgaattatgtcattttctcaaaatttgatcgatgtcgacatgt 256  Q
    ||||||| ||||||||| |||||||||||||||| | ||||||| ||||||    
T  40317832 gattatattgaattatgccattttctcaaaattttaccgatgtccacatgt 40317882  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 18946049 - 18946085
Alignment:
Q  205 tgattataatgaattatgtcattttctcaaaatttga 241  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18946049 tgattacattgaattatgtcattttctcaaaatttga 18946085  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 33313483 - 33313530
Alignment:
Q  187 caccgacactgacatttctgattataatgaattatgtcattttctcaaa 235  Q
    |||||||||| ||| ||||||||| |||||||||||| |||||||||||    
T  33313483 caccgacact-acacttctgattacaatgaattatgttattttctcaaa 33313530  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 30080516 - 30080565
Alignment:
Q  205 tgattataatgaattatgtcattttctcaaaatttgatcgatgtcgacat 254  Q
    |||||| | |||||||||||||||||||||||||| |||  |||||||||    
T  30080516 tgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 30080565  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 14338484 - 14338537
Alignment:
Q  191 gacactgacatttctgattataatgaattatgtcattttctcaaaatttgatcg 244  Q
    ||||| ||||||| |||||| | |||||||||||||||| ||||||||| ||||    
T  14338484 gacaccgacatttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

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