View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2311_high_1 (Length: 387)
Name: NF2311_high_1
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2311_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 44404391 - 44404745
Alignment:
| Q |
15 |
cataggttacatattaatgatgatttagttataatcatgcacctaaattatctccgtaatcatgcgtgacgcgtcctcaattttctcaaccttatataat |
114 |
Q |
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| T |
44404391 |
cataggttacatattaatgatgatttagttataatcgtgcacctaaattatctccgtaattatgcgtgacgcgtcctcaattttctcaaccttatataat |
44404490 |
T |
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| Q |
115 |
gnnnnnnnactcacctattcttctcacaacaaaactcttttcttttcttagctaaggtggcacatagtccataacaatagcttagcttaaactgtggaaa |
214 |
Q |
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| T |
44404491 |
gccccct-actcacctattcttcacacaacaaaactcttttcttttcttagctaaggtggcacatagtccataacaatagcttagcttaaactgtggaaa |
44404589 |
T |
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| Q |
215 |
gcttattctgttcataactgcttatattttgtttttcaaatcaaacaaataagctttccgtagttcaatatggctcgttctttcgctaacgctaaggttt |
314 |
Q |
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| T |
44404590 |
gcttattctgttcataactgcttatattttgtttttcaaatcaaacaaataagctttccgtagttcaatatggctcgttctttcgctaacgctaaggttt |
44404689 |
T |
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| Q |
315 |
tctctgctgttgtccttgaaggattctccaacactctcacaaggtacggtgtttct |
370 |
Q |
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| T |
44404690 |
tatctgctgttgtccttgaaggattctccaacactctcacaaggtacggtgtttct |
44404745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 361
Target Start/End: Original strand, 44414342 - 44414419
Alignment:
| Q |
284 |
atggctcgttctttcgctaacgctaaggttttctctgctgttgtccttgaaggattctccaacactctcacaaggtac |
361 |
Q |
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| T |
44414342 |
atggctcgttctttcgccaacgctaaggttctctctgctatcatccttgacggtttttccaacacttttacaaggtac |
44414419 |
T |
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