View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2311_high_2 (Length: 381)
Name: NF2311_high_2
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2311_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 4302692 - 4303044
Alignment:
| Q |
18 |
agtaatgtctatgtgaaatgctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302692 |
agtaatgtctatgtgaaatgctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagct |
4302791 |
T |
|
| Q |
118 |
ttattaaaggcttatataaagtggaaccaagaaacattatacaaagggtactctcaccatttggtgttctgcatgttattaaa-ctttacttggatttca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4302792 |
ttattaaaggcttatataaagtggaaccaagaaacattatactaagggtactctcaccatttggtgttctgcatgttattaaacctttacttggatttca |
4302891 |
T |
|
| Q |
217 |
tgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4302892 |
tgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatca |
4302991 |
T |
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| Q |
317 |
cttaacagtgctctaacttatatagaattatcaagtgattctgatattcttgg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
4302992 |
cttaacagtgctctaacttatatagaattatcaagtgattctgctattgttgg |
4303044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 38 - 337
Target Start/End: Original strand, 31635399 - 31635698
Alignment:
| Q |
38 |
ctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaa |
137 |
Q |
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| T |
31635399 |
ctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaa |
31635498 |
T |
|
| Q |
138 |
gtggaaccaagaaacattatacaaagggtactctcaccatttggtgttctgcatgttattaaa-ctttacttggatttcatgaaaaaggatattggttat |
236 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31635499 |
gtggaaccaagaaacattataccaagggtactctcaccatttggtgttctgcatgttattaaacctttacttggatttcatgaaaaaggatattggttat |
31635598 |
T |
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| Q |
237 |
tctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaactta |
336 |
Q |
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| T |
31635599 |
tctctcaaataaaaggggattcgtcta-tgtgttggtttcatttattcttatacttcaagtacaaaatgatcaggcatcacttaacggtgctctaactta |
31635697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 46 - 369
Target Start/End: Original strand, 35681518 - 35681845
Alignment:
| Q |
46 |
tcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagctttattaaaggcttatataaagtggaacc |
145 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
35681518 |
tcagtttcttgataaacaaaacctccactcatgatcaatattatgcatattttatgaatgcatttttaagctttactaaaggcttatataaagtgggacc |
35681617 |
T |
|
| Q |
146 |
aagaaacattatacaaagggtactctcaccatttggtgttctgc---atgttattaaac-tttacttggatttcatgaaaaaggatattggttattctct |
241 |
Q |
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||||||| ||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
35681618 |
aagaaacgttagactaagggtactctcaccatttggtgttctgctgcatgttattaaacctttacttggatttcatgaaaagggatattggttattctct |
35681717 |
T |
|
| Q |
242 |
caaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatag |
341 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||| || |
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| T |
35681718 |
taaataaaaagggattcgtttactgtgttggtttcattcattcttacacttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacag |
35681817 |
T |
|
| Q |
342 |
aattatcaagtgattctgatattcttgg |
369 |
Q |
| |
|
||||||||||||| |||| |||| |||| |
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|
| T |
35681818 |
aattatcaagtgagtctgctattgttgg |
35681845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 31635882 - 31635922
Alignment:
| Q |
329 |
ctaacttatatagaattatcaagtgattctgatattcttgg |
369 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||| |||| |
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| T |
31635882 |
ctaacttatatagaattatcaagtgagtctgctattgttgg |
31635922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 37192586 - 37192926
Alignment:
| Q |
18 |
agtaatgtctatgtgaaatgctattatgtcagtttcttgataaacaaagcctccactcttgatcaatattatgcatatcttgtgaatgtatttttaagct |
117 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
37192586 |
agtaatgtctctgtgcaatcctattatgtcagtttcttgaaaaacaaagcttctactcttgatcaatattatgcatatcttatgaatgcatttttaagct |
37192685 |
T |
|
| Q |
118 |
ttattaaaggcttatataaagtggaaccaagaaacatta----tacaaagggtactctcaccatttggtgttctgcatgttattaaa-ctttacttggat |
212 |
Q |
| |
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||||||||||||||||| |||||| |||||||||| ||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
37192686 |
ttattaaaggcttatatgaagtgggaccaagaaacgttagactaactaagggtactctcaccatttgatgttctgcatgttattaaacctttacttggac |
37192785 |
T |
|
| Q |
213 |
ttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatacttcaagtacaaaatgattaggc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||| ||| | |||| |
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|
| T |
37192786 |
ttcatgaaaaaggatattggttattctctcaaataaaaagggatccacttactgtgttggtttcattcattcctatacttcaagtacaacatggtcaggc |
37192885 |
T |
|
| Q |
313 |
atcacttaacagtgctctaacttatatagaattatcaagtg |
353 |
Q |
| |
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||||||||||| ||||||| ||| ||||||||||||||||| |
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|
| T |
37192886 |
atcacttaacaatgctctagcttgtatagaattatcaagtg |
37192926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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