View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2311_high_4 (Length: 263)

Name: NF2311_high_4
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2311_high_4
NF2311_high_4
[»] chr8 (10 HSPs)
chr8 (13-245)||(6449524-6449756)
chr8 (13-245)||(6455991-6456223)
chr8 (133-229)||(6351195-6351291)
chr8 (133-241)||(7457936-7458044)
chr8 (133-241)||(7470338-7470446)
chr8 (169-233)||(6262233-6262297)
chr8 (133-227)||(6362080-6362174)
chr8 (133-227)||(6287657-6287751)
chr8 (166-227)||(6389870-6389931)
chr8 (133-218)||(6409086-6409171)
[»] chr5 (2 HSPs)
chr5 (13-245)||(9606260-9606492)
chr5 (52-245)||(9590614-9590805)
[»] chr2 (1 HSPs)
chr2 (13-227)||(42689631-42689845)
[»] chr1 (1 HSPs)
chr1 (175-246)||(47126870-47126941)
[»] chr7 (1 HSPs)
chr7 (176-230)||(46709183-46709237)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 6449524 - 6449756
Alignment:
Q  13 aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatggttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6449524 aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg 6449623  T
Q  113 gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  6449624 gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaaattaacagctgcatgaagagc 6449723  T
Q  213 agaagcagtccatataataatggagcaagattg 245  Q
    |||||||||||||||||||||||||||||||||    
T  6449724 agaagcagtccatataataatggagcaagattg 6449756  T

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Target: chr8; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 6455991 - 6456223
Alignment:
Q  13 aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatggttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg 112  Q
    |||||||| ||||||||||||||||  ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||    
T  6455991 aatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgaggacttttcaccatctcatcatactccg 6456090  T
Q  113 gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagc 212  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||    
T  6456091 gagttccttgctccggaataaatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagc 6456190  T
Q  213 agaagcagtccatataataatggagcaagattg 245  Q
     |||||||||||||| |||||||||||||||||    
T  6456191 tgaagcagtccatatgataatggagcaagattg 6456223  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 6351195 - 6351291
Alignment:
Q  133 aatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatataa 229  Q
    |||||||||||  ||||||| ||||| |||||||||||||| || |||||||||||||| |||||||| |||||||| || |||||| |||||||||    
T  6351195 aatcttctactctttgttggccggttaaggatatatcctccatatggatattgtccgaaattaacagctgcatgaagtgctgaagcaatccatataa 6351291  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 7457936 - 7458044
Alignment:
Q  133 aatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatataataa 232  Q
    |||||||||||  ||||||| ||||| |||||||||||||| || | ||||||||| || |||||||| |||||||| || |||||| ||||||| | ||    
T  7457936 aatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaa 7458035  T
Q  233 tggagcaag 241  Q
    ||| |||||    
T  7458036 tggtgcaag 7458044  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 7470338 - 7470446
Alignment:
Q  133 aatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatataataa 232  Q
    |||||||||||  ||||||| ||||| |||||||||||||| || | ||||||||| || |||||||| |||||||| || |||||| ||||||| | ||    
T  7470338 aatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaa 7470437  T
Q  233 tggagcaag 241  Q
    ||| |||||    
T  7470438 tggtgcaag 7470446  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 6262233 - 6262297
Alignment:
Q  169 cctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatataataat 233  Q
    ||||| || ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||    
T  6262233 cctccatacggatattgtccaaaattaacagctgcatgaagagctgaagcagtccatatgataat 6262297  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 6362080 - 6362174
Alignment:
Q  133 aatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatat 227  Q
    |||||||||||  | ||||| ||||| | |||||||||||| || ||||||||||| || ||||| || |||||||| || |||||| |||||||    
T  6362080 aatcttctacttttagttggtcggttaacgatatatcctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatat 6362174  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 6287657 - 6287751
Alignment:
Q  133 aatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatat 227  Q
    |||||||| ||  ||||||| ||||| || || || || ||||| ||||||||||| || |||||||| |||||||| || |||||| |||||||    
T  6287657 aatcttctgctttttgttggtcggttaagaatgtaaccaccgtacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccatat 6287751  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 6389870 - 6389931
Alignment:
Q  166 tatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatat 227  Q
    ||||| ||||| ||||||||||| || |||||||| |||||||| || |||||| |||||||    
T  6389870 tatccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6389931  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 6409086 - 6409171
Alignment:
Q  133 aatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagc 218  Q
    |||||||||||  | ||||| ||||| |  || ||||| ||||||||||||||||| || |||||||| |||||||| || |||||    
T  6409086 aatcttctacttttagttggtcggttaacaatgtatccaccgtaaggatattgtccaaaattaacagctgcatgaagtgctgaagc 6409171  T

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Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 9606492 - 9606260
Alignment:
Q  13 aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatggttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg 112  Q
    |||||||| ||||||||||||||||  ||||||||||| ||||||||||| ||||||||||| |||||||||||  |||||||||||||||| || | ||    
T  9606492 aatatctcaatcacagaaagatcaattagggtttgatattttggtgtaattgttctcaaatatgccttttgagggtttttcaccatctcatcataattcg 9606393  T
Q  113 gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagc 212  Q
    ||||||||  |||||| ||  |||||| ||||| |||||||||||| || ||||| ||||| |||||||||||||| || |||||||| |||||||||||    
T  9606392 gagttcctttctccgggatccatcttcgactaagtgttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagc 9606293  T
Q  213 agaagcagtccatataataatggagcaagattg 245  Q
    ||||||||||||||| |||||||| || |||||    
T  9606292 agaagcagtccatatgataatggaacatgattg 9606260  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 9590805 - 9590614
Alignment:
Q  52 tttggtgtaatggttctcaaatacgccttttgaggacttttcaccatctcatcgtattccggagttcctggctccggaataaatcttctactaattgttg 151  Q
    ||||| ||||| ||||||||||| | |||||| ||| |||||||||| || || |||||  ||||||||  ||| || ||  ||||| ||| || | |||    
T  9590805 tttggcgtaattgttctcaaatatggcttttggggatttttcaccatttcttcatattcaagagttcctttctctggtatccatcttttaccaactattg 9590706  T
Q  152 gacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatataataatggagcaagattg 245  Q
    ||||||| |||||| | | ||  |||||||||||||| ||||||||||| ||||||||||||| || ||||||||| |||||||| ||||||||    
T  9590705 gacggtttaggataaaacatc--taaggatattgtccaaagttaacagcagcatgaagagcaggagtagtccatatgataatggaccaagattg 9590614  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 42689845 - 42689631
Alignment:
Q  13 aatatctcgatcacagaaagatcaacaagggtttgatactttggtgtaatggttctcaaatacgccttttgaggacttttcaccatctcatcgtattccg 112  Q
    ||||| || ||||| ||||| |||| ||| || ||| |||| || || || |||||||| || |||||||||||||| |||||||| ||||| ||||  |    
T  42689845 aatatttctatcactgaaaggtcaataagagtctgaaacttcggcgtgattgttctcaagtaagccttttgaggactcttcaccatttcatcatattgtg 42689746  T
Q  113 gagttcctggctccggaataaatcttctactaattgttggacggttcaggatatatcctccgtaaggatattgtccgaagttaacagcggcatgaagagc 212  Q
     |||||||  ||| ||||  ||||||||||| || ||||| ||||| || ||| | || ||||||||||||||||| || |||||||| || || || ||    
T  42689745 cagttccttcctcaggaagtaatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatattgtccaaaattaacagctgcgtggagggc 42689646  T
Q  213 agaagcagtccatat 227  Q
     ||||| ||||||||    
T  42689645 tgaagccgtccatat 42689631  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 47126870 - 47126941
Alignment:
Q  175 taaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatataataatggagcaagattgt 246  Q
    ||||| |||||||| ||||| ||||| ||||||| |||||||||   |||||||||||||| ||||||||||    
T  47126870 taagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgcaagattgt 47126941  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 46709183 - 46709237
Alignment:
Q  176 aaggatattgtccgaagttaacagcggcatgaagagcagaagcagtccatataat 230  Q
    ||||||||||||| ||||| ||||| ||||| ||||| |||||| ||||||||||    
T  46709183 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataat 46709237  T

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