View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2311_high_6 (Length: 226)
Name: NF2311_high_6
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2311_high_6 |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 30716560 - 30716439
Alignment:
| Q |
105 |
gctaaataatattttcatgcatggtaagttattcaattctatgccaaaatgagtccatatacaaaacaacttccctactaattaaataaagctctatgtg |
204 |
Q |
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| T |
30716560 |
gctaaataatattttcatgcatggtaagttattcaattctatgccaaaatgagtctatatacaaaacaacttccctactaattaaataaagctctatgtg |
30716461 |
T |
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| Q |
205 |
taaaacacaattctgaatctat |
226 |
Q |
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|||||||||||||||||||||| |
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| T |
30716460 |
taaaacacaattctgaatctat |
30716439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 30716664 - 30716580
Alignment:
| Q |
25 |
ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaa |
109 |
Q |
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| T |
30716664 |
ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaa |
30716580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 30895624 - 30895693
Alignment:
| Q |
25 |
ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa |
94 |
Q |
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| T |
30895624 |
ttattgtacaataacaaatgctgttgaaataccatcttctaaccatgaatgtccgtttatttatttacaa |
30895693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 28119119 - 28119000
Alignment:
| Q |
105 |
gctaaataatattttcatgcatggtaagttattcaattctatgccaaaatgagtccatatacaaaacaacttccctactaattaaataaagctctatgtg |
204 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28119119 |
gctagataatattttcatgcatggtaagttattcaattctatgccaaaatgagtctatatacaaaacaacttccctactaattaaataaagctc--tgtg |
28119022 |
T |
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| Q |
205 |
taaaacacaattctgaatctat |
226 |
Q |
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| T |
28119021 |
taaaacacaattctgaacctat |
28119000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 28119224 - 28119140
Alignment:
| Q |
25 |
ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaa |
109 |
Q |
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| T |
28119224 |
ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcaagtttatttattcacaaaccaatcactgctaa |
28119140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 971244 - 971313
Alignment:
| Q |
25 |
ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
971244 |
ttattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa |
971313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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