View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2311_high_7 (Length: 218)
Name: NF2311_high_7
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2311_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 30716233 - 30716382
Alignment:
| Q |
23 |
aaagatctttttagatgattttctatgggagaaagtagtggtctagggaagattgaaatgaatgaagatgaaaagggcggtgaaactgtggcnnnnnnnn |
122 |
Q |
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| T |
30716233 |
aaagatctttttagatgattttctatgggagaaagtagtggtctagggaagattgaaatgaacgaaggtgaaaagggcggtgaaactgtggcggggggag |
30716332 |
T |
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| Q |
123 |
natgaaaaaagaccagtggcaatgcacaaaaaatctgtgttagaagaaaa |
172 |
Q |
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| T |
30716333 |
tatgaaaatagaccagtgtcaatgcacaaaacagctgtgttggaagaaaa |
30716382 |
T |
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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 28118822 - 28118943
Alignment:
| Q |
51 |
gagaaagtagtggtctagggaagattgaaatgaatgaagatgaaaagggcggtgaaactgtggcnnnnnnnnnatgaaaaaagaccagtggcaatgcaca |
150 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||| |||| |||| |||||||| |
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| T |
28118822 |
gagaaagtagtggtctagggaagattgaaatgaatggaggtgaaaagggcggtgaaactgtggcggggggagtatgaaaatagactagtgttaatgcaca |
28118921 |
T |
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| Q |
151 |
aaaaatctgtgttagaagaaaa |
172 |
Q |
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||| |||| |||| |||||||| |
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| T |
28118922 |
aaacatctctgttggaagaaaa |
28118943 |
T |
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