View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2311_low_1 (Length: 671)
Name: NF2311_low_1
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2311_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 2 - 657
Target Start/End: Original strand, 3424582 - 3425249
Alignment:
| Q |
2 |
gaagaaatttaagggccataacatcgaattcgacttctacatccttgtcaaaattaaagaagcaatggtggatgtttcttcaaattgcatggagttagca |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3424582 |
gaagaaatttaagggccataacatcgaattcgacttctacatccttgtcaaaattaaagaagcaatggtggatgtttcttcaaattgcatggagttagca |
3424681 |
T |
|
| Q |
102 |
ctaaaggttagaaaaatggcatacnnnnnnnnn--------tacatttagttaatattcattaggataatttaatttagattatatttgcatttaaattt |
193 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3424682 |
ctaaaggttagaaaaatggcatacaaaaaaaataaaaaaaatacatttggttaatattcattaggataatttaatttagattatatttgcatttaaattt |
3424781 |
T |
|
| Q |
194 |
aa----tgcaggaaagacgtattaataatagtagtgatggaaaaagaaaagaatgtggtggtaagttgctttggagggctttccaatttgcatttagagt |
289 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3424782 |
aattaatgcaggaaagacgtattaataatagtagtgatggaaaaagaaaagaatgtggtggtaagttgctttggagggctttccaatttgcatttagagt |
3424881 |
T |
|
| Q |
290 |
ttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaaagtgaccctcatcaaccatagctatgcatt |
389 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
3424882 |
ttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaaagtgaccctaatcaaccatagctattcatt |
3424981 |
T |
|
| Q |
390 |
gatcttcttccacaatgattcttgttaataatcatgtaatatgtatatgtgcatgtgtggattaaaatattgacattgactgagatacctaaagtcgaga |
489 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3424982 |
gatcttcttccacaatgattcttgttaataatcatgtaatatgtatatgtgcatgtgtggattaaaatattgacaagtgctgagatacctaaagtcgaga |
3425081 |
T |
|
| Q |
490 |
nnnnnnnnnnnnnnnnatatgaaaaaatgtcaatccatttttgtttaaagccaaaatgaatatattgaaaccatgtgctcaaccaacctgtaaattctta |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425082 |
ttttattttttgttttatatgaaaaaatgtcaatccatttttgtttaaagccaaaatgaatatattgaaaccatgtgctcaaccaacctgtaaattctta |
3425181 |
T |
|
| Q |
590 |
tgatgtgatggattattacatctacaccgatgattaagagagataccgaatgaattaattgttaattg |
657 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425182 |
tgatgtgatggattattacatctacaccgatgattaagagagataccgaatgaattaattgttaattg |
3425249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 408
Target Start/End: Complemental strand, 11916831 - 11916422
Alignment:
| Q |
3 |
aagaaatttaagggccata-----acatcgaattcgacttctacatccttgtcaaaattaaagaagcaatggtggatgtttcttcaaattgcatggagtt |
97 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
11916831 |
aagaaatttaagggccataacataacatcgatttcgacttctacatccttgtaaaaattaaagaagcaatggcagatgtttcctcaaattgcatagagtt |
11916732 |
T |
|
| Q |
98 |
agcactaaaggttagaaaaatggcatacnnnnnnnnntacatttagttaatattcattaggataatttaatttagattatatttgcatttaaatttaatg |
197 |
Q |
| |
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| |||||||||||||||||||| |||| | |||| || ||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11916731 |
aacactaaaggttagaaaaatgtcatatcaaaaaaaaaatatttggtaaatcttcattaggataatttaatttagattaaatttgcatttaaatttaatg |
11916632 |
T |
|
| Q |
198 |
caggaaagacgtattaataatagtagtgatggaaaaagaaaagaatgtggtggtaagttgctttggagggctttccaatttgcatttagagtttatacat |
297 |
Q |
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| T |
11916631 |
caggaaagacgcattaataataatagtgatgggaaaagaaaagaatgtggtggtaagttgctttggagggctttccaatttgcatttagggtttatacat |
11916532 |
T |
|
| Q |
298 |
ttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggctaaggaaattgaaagtgaccctcatcaaccatagctatgcattgatcttct |
397 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| | |
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| T |
11916531 |
ttgctggtggacatgatgatcgtgctgacaaactcataagagaattggctaaggaaattgaaagtgaccctaatcaaccatggctatgttttgatctt-t |
11916433 |
T |
|
| Q |
398 |
tccacaatgat |
408 |
Q |
| |
|
|| |||||||| |
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|
| T |
11916432 |
tctacaatgat |
11916422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 589 - 648
Target Start/End: Complemental strand, 11914863 - 11914804
Alignment:
| Q |
589 |
atgatgtgatggattattacatctacaccgatgattaagagagataccgaatgaattaat |
648 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| |
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| T |
11914863 |
atgatgtgatggattattacatctacaccaatgaataagagagatactgaatgaattaat |
11914804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 35742232 - 35742140
Alignment:
| Q |
256 |
tgctttggagggctttccaatttgcatttagagtttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaattggcta |
348 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| | || || |||||||||||||||| ||| |||||||| |||| | |||||||||||||||| |
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| T |
35742232 |
tgctatggagggcgttccaatttacatttcgtgtctacacatttgctggtggacttgacgatcgtgccgacacgttaacaagagaattggcta |
35742140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 599
Target Start/End: Original strand, 6607320 - 6607363
Alignment:
| Q |
556 |
gaaaccatgtgctcaaccaacctgtaaattcttatgatgtgatg |
599 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
6607320 |
gaaaccatgtgctcaaccaacatataaattcttatgatgtgatg |
6607363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 35742493 - 35742444
Alignment:
| Q |
60 |
gaagcaatggtggatgtttcttcaaattgcatggagttagcactaaaggt |
109 |
Q |
| |
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|||||||||||||||||||| || |||||||||||||||| ||| ||||| |
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| T |
35742493 |
gaagcaatggtggatgtttcctccaattgcatggagttagtacttaaggt |
35742444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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