View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2311_low_5 (Length: 302)
Name: NF2311_low_5
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2311_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 2510626 - 2510324
Alignment:
| Q |
1 |
aatttaagacatgagaacatataaagagataggcaaatgcaaaaatttgaaaatagagtctgggatttatccataaccttccttcatgaatattattatt |
100 |
Q |
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| T |
2510626 |
aatttaagacatgagaacatataaagagataggcaaatgcaaaaatttgaaaatagagtctcggatttatccataaccttccttcatgaatattattatt |
2510527 |
T |
|
| Q |
101 |
ttcattctttgcacaaatatgcatcttgtattttacaccattgttttccatgtcatatagttgacgacaaccatccaagagacactctcacatacattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510526 |
ttcattctttgcacaaatatgcatcttgtattttacaccattgttttccatgtcatatagttgacgacaaccatccaagagacactctcacatacattta |
2510427 |
T |
|
| Q |
201 |
atgaagtggaaagatttgttgacattttttggacaattg-----------------ttgtcaaatttctttttcaattgtcaacaatattgaatgatttt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510426 |
atgaagtggaaagatttgttgacattttttggacaattgttgtagagttcaagattttgtcaaatttctttttcaattgtcaacaatattgaatgatttt |
2510327 |
T |
|
| Q |
284 |
aat |
286 |
Q |
| |
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||| |
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|
| T |
2510326 |
aat |
2510324 |
T |
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