View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2311_low_7 (Length: 234)
Name: NF2311_low_7
Description: NF2311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2311_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 29025009 - 29025194
Alignment:
| Q |
18 |
catttttactgcatataaaagctaaataa-tcaatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagtttatagacaaacc |
116 |
Q |
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| T |
29025009 |
catttttactgcatataaaagctaaataaatcaatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagtttatggacaaacc |
29025108 |
T |
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| Q |
117 |
cagagcgcatgcacttctctatgcactctccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctaca |
202 |
Q |
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| T |
29025109 |
cagagcgcatgcacttctctatgcactctccgcagaaacgatgcaagcattttcttatagtttttgttttccgtaagatacctaca |
29025194 |
T |
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Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 39 - 208
Target Start/End: Original strand, 36067704 - 36067873
Alignment:
| Q |
39 |
ctaaataatcaatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagtttatagacaaacccagagcgcatgcacttctctat |
138 |
Q |
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| T |
36067704 |
ctaaataatcaacacagttcaaactaaaaatatgtaaaatattgataagtaaatatggtggaagttcaaggaaaaacccaaagcgcatgcacttgtttat |
36067803 |
T |
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| Q |
139 |
gcactctccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctacacatata |
208 |
Q |
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| T |
36067804 |
gcactcttcgcagaaacgatgcagacattctcttatagtttttgttttccgaatgattcctacacatata |
36067873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 35152090 - 35152147
Alignment:
| Q |
49 |
aatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagttta |
106 |
Q |
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| T |
35152090 |
aatacaatccaaactaaaaatatgtgaaatattgataagtaaagatggtggaagttta |
35152147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 21547987 - 21548073
Alignment:
| Q |
122 |
cgcatgcacttctctatgcactctccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctacacatata |
208 |
Q |
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| T |
21547987 |
cgcatgcacttgtctatgcacactttgcaaaagcgatgcatgcattccattgaagttcttgtttttcgaatgatgcctacacatata |
21548073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 35139774 - 35139848
Alignment:
| Q |
134 |
tctatgcactctccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctacacatata |
208 |
Q |
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||||||||||||| ||| || ||||||||||| || ||| ||| |||||||||| ||||| |||||||||||| |
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| T |
35139774 |
tctatgcactctctgcaaaagcgatgcaagcactccattacggttcttgtttttcgaatgatgcctacacatata |
35139848 |
T |
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