View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2312_high_116 (Length: 213)
Name: NF2312_high_116
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_116 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 12926429 - 12926225
Alignment:
| Q |
7 |
atattgattaggatcattattctgtgggaaaccatttgtcagaacattatacacacacatacacgttacaacattacatgaatttaattattctaaagtt |
106 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12926429 |
atattgattaggatcattattttgtagaaaaccatttgtcataacattatacacacacatacacgttacaacattacatgaatttaattattctaaagtt |
12926330 |
T |
|
| Q |
107 |
tcaatgttctagtaacatggaaatttacattgaatacatgtttgtatatgtagctttgtgtagagatagattcaagtggaagctccaatcctctgtcacg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12926329 |
tcaatgttctagtaacatggaaatttacattgaatacatgtttgtatatgtagctttgtgtagagatagattcaagtggaagctccaatcctctgtctcg |
12926230 |
T |
|
| Q |
207 |
tgctt |
211 |
Q |
| |
|
||||| |
|
|
| T |
12926229 |
tgctt |
12926225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University