View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_high_117 (Length: 206)
Name: NF2312_high_117
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_high_117 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 29710928 - 29711106
Alignment:
| Q |
17 |
agttacatacttacaaccacaataaaacaatgacagaatatgccagatgagattccgaaaattgttaccacttgtgcaattaaatcaaaataaagaatta |
116 |
Q |
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| T |
29710928 |
agttacatacttacaaccacaataaaacaacgacagaatatgccagatgagattcagaaaattgttaccacttgtgcaattaaatcaaaataaagaatta |
29711027 |
T |
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| Q |
117 |
aaaggtatggtgttatt---tttaacatgatttattagcccagtttgaacctcctaaacaaacactgtccaagaataat |
192 |
Q |
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| T |
29711028 |
aaaggtatggtgttattgtatttaacatgatttattagcccagtttgaacctcctaaacaaacactgtccaagaataat |
29711106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 192
Target Start/End: Complemental strand, 29692734 - 29692611
Alignment:
| Q |
79 |
tgttaccacttgtgcaattaaatcaaaataaagaattaaaaggtatggtgttattt----------ttaacatgatttattagcccagtttgaacctcct |
168 |
Q |
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| T |
29692734 |
tgttaccacttgtacaattaaatcaaaataaagaattaaaaggtatgttgttaattgttattgtgattaacatgactgattagcccagtttgaaccacct |
29692635 |
T |
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| Q |
169 |
aaacaaacactgtccaagaataat |
192 |
Q |
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| T |
29692634 |
aaacaaacattgtccaagaataat |
29692611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 29698780 - 29698612
Alignment:
| Q |
27 |
ttacaaccacaataaaacaatgacagaatatgccagatgagattccgaaaattgttaccacttgtgcaa-ttaaatcaaaataaagaattaaaaggtatg |
125 |
Q |
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| T |
29698780 |
ttacaaccatagtaaaactatgacatgttatgctagatgagattcagaaaattgt-accacttggacaaattaaatataaataaagaattaaaaggtatg |
29698682 |
T |
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| Q |
126 |
gtgttatt---tttaacatgatttattagcccagtttgaacctcctaaacaaacactgtccaagaataat |
192 |
Q |
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||||||| ||||||| |||| |||||||| |||| | |||| |||||||| ||||| |||||||||| |
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| T |
29698681 |
atgttattgtatttaacaagattgattagcccggtttcaccctcgtaaacaaagactgttcaagaataat |
29698612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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